PFRMAT SS
TARGET T0049_1:392
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t49.t98_2.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 11.3139
METHOD
METHOD The seconary structure prediction does not agree well with the alignment
METHOD with 3pte predicted by the UCSC fold-recognition group.
METHOD We suspect that the alignment is better than the secondary-structure
METHOD prediction.
MODEL 1
M C 0.91
T C 0.74
A C 0.50
A C 0.51
S C 0.59
L C 0.71
D C 0.89
P C 0.91
T C 0.71
A C 0.66
F C 0.76
S C 0.73
L C 0.56
D H 0.69
A H 0.80
A H 0.84
S H 0.85
L H 0.83
A H 0.82
A H 0.86
R H 0.82
L H 0.89
D H 0.94
A H 0.96
V H 0.93
F H 0.94
D H 0.95
Q H 0.95
A H 0.92
L H 0.91
R H 0.86
E H 0.84
R H 0.69
R H 0.52
L C 0.48
V C 0.63
G C 0.76
A C 0.51
V E 0.81
A E 0.93
I E 0.94
V E 0.89
A E 0.71
R C 0.60
H C 0.88
G C 0.93
E C 0.79
I E 0.58
L E 0.77
Y E 0.79
R E 0.68
R E 0.51
A C 0.57
Q C 0.74
G C 0.79
L C 0.61
A C 0.56
D C 0.59
R C 0.64
E C 0.80
A C 0.81
G C 0.85
R C 0.89
P C 0.80
M C 0.77
R C 0.81
E C 0.77
D C 0.90
T C 0.79
L E 0.58
F E 0.82
R E 0.90
L E 0.94
A E 0.90
S E 0.79
V E 0.58
T C 0.42
K H 0.56
P H 0.78
I H 0.84
V H 0.85
A H 0.88
L H 0.90
A H 0.93
V H 0.94
L H 0.94
R H 0.92
L H 0.94
V H 0.91
A H 0.81
R C 0.50
G C 0.77
E C 0.64
L C 0.62
A C 0.78
L C 0.75
D C 0.79
A C 0.67
P C 0.60
V H 0.67
T H 0.66
R H 0.55
W C 0.47
L C 0.68
P C 0.85
E C 0.67
F C 0.71
R C 0.73
P C 0.73
R C 0.68
L C 0.74
A C 0.82
D C 0.85
G C 0.90
S C 0.87
E C 0.93
P C 0.87
L C 0.48
V E 0.56
T E 0.54
I H 0.65
H H 0.86
H H 0.90
L H 0.88
L H 0.76
T H 0.50
H C 0.58
T C 0.85
S C 0.89
G C 0.84
L C 0.69
G C 0.57
Y C 0.55
W C 0.61
L C 0.65
L C 0.68
E C 0.77
G C 0.84
A C 0.70
G C 0.72
S C 0.72
V C 0.70
Y C 0.75
D C 0.74
R C 0.59
L C 0.64
G C 0.73
I C 0.69
S C 0.81
D C 0.91
G C 0.83
I C 0.62
D C 0.51
L H 0.52
R H 0.69
D H 0.76
F H 0.75
D H 0.60
L H 0.72
D H 0.86
E H 0.87
N H 0.85
L H 0.87
R H 0.84
R H 0.81
L H 0.61
A C 0.59
S C 0.73
A C 0.81
P C 0.86
L C 0.70
S C 0.61
F C 0.71
A C 0.88
P C 0.91
G C 0.93
S C 0.74
G E 0.68
W E 0.84
Q E 0.87
Y E 0.76
S C 0.54
L C 0.77
A C 0.72
L H 0.43
D H 0.60
V H 0.69
L H 0.83
G H 0.90
A H 0.93
V H 0.95
V H 0.96
E H 0.93
R H 0.87
A H 0.61
T C 0.77
G C 0.75
Q C 0.73
P C 0.53
L H 0.87
A H 0.94
A H 0.98
A H 0.97
V H 0.96
D H 0.96
A H 0.96
L H 0.91
V H 0.77
A C 0.53
Q C 0.82
P C 0.76
L C 0.77
G C 0.79
M C 0.74
R C 0.80
D C 0.78
C C 0.88
G C 0.72
F E 0.52
V C 0.48
S C 0.63
A C 0.58
E C 0.50
P H 0.63
E H 0.80
R H 0.83
F H 0.77
A H 0.65
V H 0.51
P C 0.36
Y C 0.38
H C 0.52
D C 0.71
G C 0.81
Q C 0.88
P C 0.93
E C 0.91
P C 0.69
V C 0.49
R C 0.55
M C 0.62
R C 0.77
D C 0.88
G C 0.91
I C 0.75
E C 0.75
V C 0.84
P C 0.88
L C 0.85
P C 0.78
E C 0.73
G C 0.78
H C 0.71
G C 0.72
A C 0.50
A H 0.36
V H 0.41
R C 0.38
F C 0.58
A C 0.86
P C 0.92
S C 0.89
R C 0.74
V C 0.68
F C 0.72
E C 0.88
P C 0.91
G C 0.87
A C 0.71
Y C 0.64
P C 0.68
S C 0.86
G C 0.86
G C 0.71
A C 0.68
G C 0.67
M C 0.47
Y C 0.49
G C 0.73
S C 0.79
A H 0.80
D H 0.96
D H 0.97
V H 0.98
L H 0.99
R H 0.99
A H 0.99
L H 0.99
E H 0.98
A H 0.96
I H 0.89
R H 0.56
A C 0.75
N C 0.89
P C 0.86
G C 0.70
F C 0.70
L C 0.72
P C 0.57
E H 0.60
T H 0.49
L H 0.67
A H 0.85
D H 0.93
A H 0.92
A H 0.91
R H 0.86
R H 0.81
D H 0.70
Q H 0.49
A C 0.53
G C 0.58
V C 0.74
G C 0.82
A C 0.77
E C 0.74
T C 0.67
R C 0.73
G C 0.68
P C 0.69
G C 0.76
W C 0.65
G C 0.55
F C 0.49
G C 0.43
Y E 0.41
L E 0.45
S E 0.50
A E 0.50
V E 0.47
L C 0.55
D C 0.76
D C 0.90
P C 0.65
A H 0.56
A C 0.50
A C 0.66
G C 0.87
T C 0.94
P C 0.93
Q C 0.94
H C 0.87
A C 0.66
G C 0.54
T E 0.57
L E 0.60
Q E 0.49
W C 0.64
G C 0.84
G C 0.72
V C 0.54
Y C 0.60
G C 0.78
H C 0.63
S C 0.47
W C 0.43
F E 0.44
V C 0.56
D C 0.86
R C 0.85
A C 0.77
L C 0.64
G C 0.47
L E 0.60
S E 0.77
V E 0.81
L E 0.80
L E 0.78
L E 0.52
T C 0.44
N C 0.58
T C 0.62
A C 0.76
Y C 0.70
E C 0.65
G C 0.76
M C 0.76
S C 0.76
G C 0.85
P C 0.63
L C 0.39
T E 0.52
I E 0.61
A E 0.53
L C 0.55
R C 0.86
D C 0.88
A C 0.70
V C 0.50
Y C 0.42
A C 0.41
R C 0.54
END