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\put (49,7) {\makebox(0,0)[bc]{340}}
\dottedline{0.400000}(50,2)(35.000000,4.000000)
\dottedline{0.400000}(51,2)(36.000000,4.000000)
\put (-7,4) {\makebox(0,0)[bl]{T0049}}
\put (-7,0) {\makebox(0,0)[bl]{3pte}}
\put (0.5,4) {\makebox(0,0)[bl]{LQWggvYGHSWFVDRALGLSVLLLTNTAYegMSGPLTIALRDAVYAR----}}
\put (0.5,0) {\makebox(0,0)[bl]{VQG...YYTYAFASKDGKRSVTALANTSN..NVNVLNTMARTLESAFCGKP}}
\end{picture}
\normalfont
\caption{Comparison of candidate 3pte-t49-hand.a2m to reference 3pte-t49-global.pw.a2m.
Reference alignment has 333 matching columns.
Candidate alignment has 306 matching columns,  589 were used (for template shift+target shift) to compute shift score.
Shift score=0.833161, min shift=0, max shift=19, mean=0.463051.
Optimal subalignment has 258 matching columns,  506 were used (for template shift+target shift) to compute shift score.
  Optimum Shift score=0.856176, min shift=0, max shift=0, mean=0.000000.
  Optimum achieved by removing
the 48 columns indicated with dotted lines from the candidate alignment.
}
\end{center}
\end{figure}
\end{document}
