PFRMAT SS
TARGET T0044_1:347
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t44.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 7.33957
METHOD
MODEL 1
M C 0.79
V C 0.79
K C 0.86
R C 0.64
M E 0.77
I E 0.91
A E 0.94
L E 0.85
D E 0.53
G C 0.66
A C 0.66
Q C 0.50
G H 0.42
E C 0.45
G C 0.79
G C 0.86
G C 0.66
Q H 0.49
I H 0.55
L H 0.71
R H 0.78
S H 0.80
A H 0.84
L H 0.91
S H 0.93
L H 0.92
S H 0.91
M H 0.87
I H 0.69
T C 0.58
G C 0.86
Q C 0.93
P C 0.82
F E 0.61
T E 0.90
I E 0.95
T E 0.94
S E 0.93
I E 0.89
R E 0.80
A E 0.50
G C 0.82
R C 0.88
A C 0.90
K C 0.94
P C 0.95
G C 0.86
L C 0.62
L C 0.49
R C 0.53
Q C 0.52
H H 0.58
L H 0.77
T H 0.86
A H 0.95
V H 0.98
K H 0.99
A H 0.99
A H 0.99
T H 0.98
E H 0.97
I H 0.82
C C 0.68
G C 0.78
A C 0.71
T C 0.48
V E 0.60
E E 0.59
G E 0.52
A C 0.47
E C 0.45
L C 0.59
G C 0.84
S C 0.80
Q E 0.59
R E 0.87
L E 0.93
L E 0.92
F E 0.76
R C 0.71
P C 0.86
G C 0.84
T C 0.64
V C 0.53
R C 0.59
G C 0.82
G C 0.87
D C 0.65
Y E 0.54
R E 0.61
F E 0.57
A E 0.49
I C 0.60
G C 0.84
S C 0.72
A C 0.61
G C 0.60
S C 0.46
C H 0.69
T H 0.77
L H 0.80
V H 0.79
L H 0.86
Q H 0.77
T H 0.71
V H 0.70
L H 0.64
P H 0.52
A H 0.50
L H 0.46
W H 0.41
F C 0.40
A C 0.58
D C 0.82
G C 0.90
P C 0.91
S C 0.55
R E 0.87
V E 0.95
E E 0.97
V E 0.92
S E 0.64
G C 0.51
G C 0.54
T C 0.57
D C 0.62
N C 0.74
P C 0.85
S C 0.82
A C 0.89
P C 0.93
P C 0.78
A C 0.44
D H 0.57
F H 0.65
I H 0.77
R H 0.84
R H 0.83
V H 0.74
L H 0.86
E H 0.89
P H 0.86
L H 0.90
L H 0.92
A H 0.85
K H 0.69
I C 0.66
G C 0.89
I C 0.72
H C 0.62
Q C 0.50
Q E 0.53
T E 0.66
T E 0.77
L E 0.74
L E 0.67
R E 0.54
H C 0.56
G C 0.72
F C 0.79
Y C 0.85
P C 0.75
A C 0.68
G C 0.92
G C 0.97
G C 0.89
V E 0.75
V E 0.95
A E 0.97
T E 0.97
E E 0.94
V E 0.72
S C 0.77
P C 0.70
V C 0.48
A C 0.48
S C 0.54
F C 0.72
N C 0.91
T C 0.78
L C 0.63
Q C 0.50
L C 0.38
G C 0.44
E C 0.47
R C 0.66
G C 0.82
N C 0.60
I E 0.65
V E 0.80
Q E 0.90
M E 0.88
R E 0.79
G E 0.70
E E 0.71
V E 0.71
L E 0.62
L E 0.51
A C 0.56
G C 0.72
V C 0.82
P C 0.64
R H 0.87
H H 0.96
V H 0.96
A H 0.98
E H 0.99
R H 0.99
E H 0.98
I H 0.99
A H 0.99
T H 0.98
L H 0.97
A H 0.93
G H 0.81
S H 0.70
F H 0.59
S C 0.56
L C 0.62
H C 0.60
E C 0.60
Q C 0.65
N C 0.63
I C 0.58
H C 0.62
N C 0.61
L C 0.67
P C 0.73
R C 0.77
D C 0.84
Q C 0.92
G C 0.95
P C 0.89
G C 0.82
N C 0.58
T E 0.85
V E 0.96
S E 0.98
L E 0.98
E E 0.95
V E 0.82
E E 0.48
S C 0.79
E C 0.93
N C 0.91
I C 0.58
T E 0.67
E E 0.72
R E 0.69
F E 0.56
F E 0.45
V C 0.45
V C 0.57
G C 0.69
E C 0.68
K C 0.79
R C 0.85
V C 0.83
S C 0.72
A H 0.76
E H 0.92
V H 0.97
V H 0.93
A H 0.98
A H 0.99
Q H 1.00
L H 0.99
V H 0.99
K H 1.00
E H 1.00
V H 0.99
K H 0.99
R H 0.98
Y H 0.96
L H 0.83
A C 0.55
S C 0.75
T C 0.88
A C 0.81
A C 0.67
V C 0.62
G H 0.48
E H 0.74
Y H 0.73
L H 0.78
A H 0.83
D H 0.88
Q H 0.91
L H 0.93
V H 0.92
L H 0.91
P H 0.90
M H 0.83
A H 0.78
L H 0.61
A C 0.71
G C 0.84
A C 0.89
G C 0.85
E C 0.61
F E 0.57
T E 0.70
V E 0.69
A E 0.58
H E 0.49
P C 0.49
S C 0.43
C H 0.46
H C 0.47
L H 0.43
L H 0.47
T C 0.44
N H 0.46
I H 0.58
A H 0.65
V H 0.60
V H 0.79
E H 0.83
R H 0.79
F H 0.61
L C 0.50
P C 0.70
V C 0.47
R E 0.70
F E 0.76
S E 0.76
L E 0.72
I E 0.56
E C 0.57
T C 0.66
D C 0.67
G C 0.71
V C 0.72
T C 0.73
R C 0.67
V C 0.64
S C 0.67
I C 0.48
E H 0.48
G C 0.53
S C 0.52
H C 0.44
H C 0.43
H C 0.52
H C 0.65
H C 0.80
H C 0.90
END