PFRMAT SS
TARGET T0044
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t44.remote_4.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 12.9925
METHOD
MODEL 1
M C 0.85
V C 0.82
K C 0.86
R C 0.63
M E 0.78
I E 0.92
A E 0.94
L E 0.86
D E 0.57
G C 0.63
A C 0.64
Q C 0.48
G H 0.43
E C 0.43
G C 0.77
G C 0.84
G C 0.60
Q H 0.55
I H 0.59
L H 0.73
R H 0.78
S H 0.79
A H 0.82
L H 0.90
S H 0.92
L H 0.92
S H 0.91
M H 0.87
I H 0.69
T C 0.57
G C 0.86
Q C 0.93
P C 0.82
F E 0.61
T E 0.89
I E 0.95
T E 0.94
S E 0.93
I E 0.89
R E 0.79
A E 0.49
G C 0.83
R C 0.88
A C 0.90
K C 0.94
P C 0.95
G C 0.86
L C 0.61
L C 0.51
R C 0.60
Q C 0.59
H H 0.54
L H 0.75
T H 0.85
A H 0.95
V H 0.98
K H 0.99
A H 0.98
A H 0.99
T H 0.98
E H 0.96
I H 0.82
C C 0.65
G C 0.81
A C 0.75
T C 0.54
V E 0.61
E E 0.68
G E 0.59
A C 0.49
E E 0.50
L E 0.49
G C 0.57
S C 0.53
Q E 0.72
R E 0.87
L E 0.91
L E 0.88
F E 0.64
R C 0.80
P C 0.89
G C 0.84
T C 0.65
V C 0.55
R C 0.61
G C 0.83
G C 0.88
D C 0.69
Y E 0.52
R E 0.60
F E 0.57
A E 0.49
I C 0.60
G C 0.83
S C 0.71
A C 0.63
G C 0.64
S C 0.51
C H 0.65
T H 0.76
L H 0.82
V H 0.82
L H 0.88
Q H 0.82
T H 0.76
V H 0.75
L H 0.69
P H 0.56
A H 0.53
L H 0.49
W H 0.43
F C 0.39
A C 0.58
D C 0.83
G C 0.91
P C 0.91
S C 0.57
R E 0.87
V E 0.95
E E 0.97
V E 0.92
S E 0.67
G E 0.50
G C 0.55
T C 0.57
D C 0.63
N C 0.77
P C 0.86
S C 0.82
A C 0.89
P C 0.94
P C 0.79
A C 0.44
D H 0.57
F H 0.65
I H 0.78
R H 0.84
R H 0.83
V H 0.74
L H 0.87
E H 0.89
P H 0.87
L H 0.90
L H 0.92
A H 0.85
K H 0.69
I C 0.64
G C 0.88
I C 0.72
H C 0.60
Q C 0.46
Q E 0.58
T E 0.71
T E 0.81
L E 0.80
L E 0.75
R E 0.63
H C 0.51
G C 0.69
F C 0.79
Y C 0.86
P C 0.75
A C 0.64
G C 0.92
G C 0.97
G C 0.91
V E 0.67
V E 0.93
A E 0.96
T E 0.96
E E 0.94
V E 0.75
S C 0.69
P C 0.65
V C 0.48
A C 0.50
S C 0.54
F C 0.69
N C 0.86
T C 0.71
L C 0.55
Q C 0.44
L C 0.38
G C 0.45
E C 0.50
R C 0.66
G C 0.78
N C 0.54
I E 0.65
V E 0.78
Q E 0.89
M E 0.86
R E 0.76
G E 0.69
E E 0.69
V E 0.71
L E 0.63
L E 0.52
A C 0.54
G C 0.71
V C 0.81
P C 0.62
R H 0.87
H H 0.96
V H 0.96
A H 0.98
E H 0.99
R H 1.00
E H 0.99
I H 0.99
A H 1.00
T H 0.99
L H 0.99
A H 0.98
G H 0.96
S H 0.92
F H 0.76
S C 0.50
L C 0.70
H C 0.75
E C 0.66
Q C 0.61
N C 0.52
I C 0.42
H C 0.45
N C 0.53
L C 0.62
P C 0.72
R C 0.84
D C 0.89
Q C 0.91
G C 0.95
P C 0.88
G C 0.82
N C 0.56
T E 0.84
V E 0.96
S E 0.98
L E 0.98
E E 0.95
V E 0.84
E E 0.51
S C 0.76
E C 0.91
N C 0.90
I C 0.58
T E 0.64
E E 0.69
R E 0.66
F E 0.52
F E 0.43
V C 0.44
V C 0.56
G C 0.68
E C 0.68
K C 0.78
R C 0.84
V C 0.82
S C 0.67
A H 0.77
E H 0.92
V H 0.97
V H 0.92
A H 0.98
A H 0.99
Q H 1.00
L H 0.99
V H 0.99
K H 1.00
E H 1.00
V H 0.99
K H 0.99
R H 0.98
Y H 0.95
L H 0.83
A C 0.55
S C 0.75
T C 0.88
A C 0.81
A C 0.67
V C 0.62
G H 0.48
E H 0.74
Y H 0.73
L H 0.78
A H 0.82
D H 0.88
Q H 0.91
L H 0.93
V H 0.92
L H 0.91
P H 0.88
M H 0.81
A H 0.75
L H 0.58
A C 0.71
G C 0.84
A C 0.89
G C 0.84
E C 0.61
F E 0.56
T E 0.69
V E 0.68
A E 0.57
H E 0.48
P C 0.49
S C 0.43
C H 0.46
H C 0.47
L H 0.43
L H 0.47
T C 0.44
N H 0.46
I H 0.58
A H 0.65
V H 0.60
V H 0.79
E H 0.83
R H 0.79
F H 0.61
L C 0.50
P C 0.70
V C 0.47
R E 0.70
F E 0.76
S E 0.77
L E 0.72
I E 0.56
E C 0.57
T C 0.67
D C 0.72
G C 0.78
V C 0.75
T C 0.75
R C 0.66
V C 0.58
S C 0.57
I C 0.47
E H 0.49
G C 0.45
S C 0.47
H C 0.44
H C 0.46
H C 0.57
H C 0.68
H C 0.80
H C 0.89
END