PFRMAT SS
TARGET T0044_1:347
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa13-9-6-11-9-3-8-7-ehl-seeded2-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t44.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode2.20comp
METHOD Total sequence weight for alignment was 7.4482
METHOD
MODEL 1
M C 0.80
V C 0.79
K C 0.83
R C 0.70
M E 0.60
I E 0.81
A E 0.86
L E 0.71
D C 0.64
G C 0.78
A C 0.70
Q C 0.52
G C 0.44
E C 0.49
G C 0.77
G C 0.88
G C 0.78
Q C 0.48
I H 0.52
L H 0.70
R H 0.80
S H 0.82
A H 0.85
L H 0.89
S H 0.89
L H 0.88
S H 0.86
M H 0.80
I H 0.57
T C 0.66
G C 0.87
Q C 0.90
P C 0.67
F E 0.70
T E 0.89
I E 0.93
T E 0.92
S E 0.89
I E 0.84
R E 0.72
A C 0.48
G C 0.78
R C 0.85
A C 0.88
K C 0.92
P C 0.93
G C 0.90
L C 0.75
L C 0.56
R C 0.46
Q H 0.49
H H 0.71
L H 0.86
T H 0.92
A H 0.96
V H 0.98
K H 0.99
A H 0.98
A H 0.98
T H 0.98
E H 0.95
I H 0.76
C C 0.69
G C 0.80
A C 0.74
T C 0.52
V E 0.57
E E 0.59
G E 0.53
A C 0.48
E E 0.47
L C 0.59
G C 0.81
S C 0.79
Q E 0.60
R E 0.87
L E 0.93
L E 0.92
F E 0.76
R C 0.67
P C 0.82
G C 0.81
T C 0.66
V C 0.60
R C 0.67
G C 0.84
G C 0.86
D C 0.63
Y E 0.60
R E 0.72
F E 0.70
A E 0.57
I C 0.58
G C 0.80
S C 0.75
A C 0.66
G C 0.58
S C 0.44
C H 0.58
T H 0.69
L H 0.78
V H 0.78
L H 0.85
Q H 0.81
T H 0.77
V H 0.73
L H 0.69
P H 0.58
A H 0.55
L H 0.52
W H 0.46
F C 0.45
A C 0.64
D C 0.84
G C 0.90
P C 0.88
S C 0.53
R E 0.87
V E 0.95
E E 0.97
V E 0.93
S E 0.76
G C 0.54
G C 0.73
T C 0.69
D C 0.72
N C 0.80
P C 0.86
S C 0.85
A C 0.87
P C 0.90
P C 0.75
A H 0.50
D H 0.70
F H 0.74
I H 0.82
R H 0.86
R H 0.85
V H 0.71
L H 0.78
E H 0.83
P H 0.83
L H 0.83
L H 0.85
A H 0.78
K H 0.60
I C 0.70
G C 0.88
I C 0.76
H C 0.62
Q C 0.51
Q E 0.46
T E 0.56
T E 0.65
L E 0.63
L E 0.53
R E 0.44
H C 0.53
G C 0.69
F C 0.79
Y C 0.83
P C 0.79
A C 0.77
G C 0.92
G C 0.96
G C 0.80
V E 0.84
V E 0.97
A E 0.98
T E 0.98
E E 0.96
V E 0.79
S C 0.69
P C 0.72
V C 0.59
A C 0.54
S C 0.59
F C 0.73
N C 0.86
T C 0.72
L C 0.58
Q C 0.48
L C 0.40
G C 0.45
E C 0.51
R C 0.70
G C 0.79
N C 0.58
I E 0.65
V E 0.79
Q E 0.88
M E 0.86
R E 0.80
G E 0.70
E E 0.69
V E 0.70
L E 0.64
L E 0.53
A C 0.46
G C 0.60
V C 0.76
P C 0.60
R H 0.84
H H 0.96
V H 0.94
A H 0.97
E H 0.99
R H 0.99
E H 0.98
I H 0.97
A H 0.98
T H 0.97
L H 0.92
A H 0.73
G C 0.58
S C 0.81
F C 0.83
S C 0.77
L C 0.77
H C 0.72
E C 0.59
Q C 0.52
N E 0.46
I E 0.57
H E 0.58
N E 0.48
L C 0.45
P C 0.54
R C 0.70
D C 0.80
Q C 0.89
G C 0.93
P C 0.91
G C 0.90
N C 0.75
T E 0.56
V E 0.80
S E 0.91
L E 0.93
E E 0.92
V E 0.86
E E 0.67
S C 0.57
E C 0.80
N C 0.83
I C 0.79
T C 0.62
E E 0.49
R E 0.59
F E 0.59
F C 0.47
V C 0.69
V C 0.76
G C 0.83
E C 0.81
K C 0.81
R C 0.84
V C 0.81
S C 0.72
A H 0.65
E H 0.89
V H 0.96
V H 0.89
A H 0.95
A H 0.99
Q H 0.99
L H 0.98
V H 0.99
K H 0.99
E H 1.00
V H 0.99
K H 0.98
R H 0.97
Y H 0.95
L H 0.84
A C 0.48
S C 0.70
T C 0.83
A C 0.74
A C 0.60
V C 0.51
G H 0.56
E H 0.72
Y H 0.71
L H 0.76
A H 0.84
D H 0.92
Q H 0.95
L H 0.97
V H 0.97
L H 0.97
P H 0.96
M H 0.93
A H 0.88
L H 0.71
A C 0.67
G C 0.89
A C 0.92
G C 0.74
E E 0.60
F E 0.78
T E 0.76
V E 0.61
A C 0.53
H C 0.52
P C 0.52
S C 0.47
C H 0.47
H H 0.45
L H 0.56
L H 0.71
T H 0.77
N H 0.83
I H 0.89
A H 0.92
V H 0.87
V H 0.92
E H 0.91
R H 0.86
F H 0.61
L C 0.55
P C 0.72
V E 0.53
R E 0.79
F E 0.86
S E 0.87
L E 0.81
I E 0.65
E C 0.54
T C 0.69
D C 0.67
G C 0.67
V C 0.74
T C 0.76
R C 0.65
V C 0.54
S C 0.53
I H 0.49
E H 0.52
G H 0.46
S C 0.47
H C 0.48
H C 0.54
H C 0.65
H C 0.74
H C 0.78
H C 0.83
END