PFRMAT SS
TARGET T0044_1:347
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa13-9-6-11-9-3-8-7-ehl-seeded2-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t44.remote_4.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode2.20comp
METHOD Total sequence weight for alignment was 71.8567
METHOD
MODEL 1
M C 0.87
V C 0.80
K C 0.71
R E 0.50
M E 0.79
I E 0.88
A E 0.88
L E 0.73
D C 0.61
G C 0.74
A C 0.68
Q C 0.53
G C 0.49
E C 0.55
G C 0.82
G C 0.90
G C 0.75
Q H 0.55
I H 0.63
L H 0.81
R H 0.89
S H 0.90
A H 0.92
L H 0.93
S H 0.91
L H 0.91
S H 0.89
M H 0.83
I H 0.58
T C 0.68
G C 0.87
Q C 0.89
P C 0.71
F E 0.54
T E 0.73
I E 0.73
T E 0.60
S E 0.55
I E 0.47
R E 0.37
A C 0.50
G C 0.71
R C 0.81
A C 0.86
K C 0.90
P C 0.92
G C 0.91
L C 0.79
L C 0.67
R C 0.65
Q C 0.57
H H 0.68
L H 0.87
T H 0.94
A H 0.97
V H 0.99
K H 0.99
A H 0.98
A H 0.99
T H 0.98
E H 0.97
I H 0.82
C C 0.64
G C 0.80
A C 0.70
T E 0.48
V E 0.63
E E 0.63
G E 0.49
A C 0.59
E C 0.51
L C 0.54
G C 0.64
S C 0.58
Q E 0.66
R E 0.83
L E 0.88
L E 0.83
F E 0.58
R C 0.78
P C 0.86
G C 0.82
T C 0.67
V C 0.62
R C 0.69
G C 0.84
G C 0.86
D C 0.62
Y E 0.63
R E 0.74
F E 0.72
A E 0.57
I C 0.59
G C 0.81
S C 0.78
A C 0.71
G C 0.67
S C 0.54
C H 0.42
T H 0.49
L H 0.54
V H 0.49
L H 0.59
Q H 0.54
T H 0.52
V H 0.45
L C 0.45
P H 0.45
A H 0.50
L H 0.49
W H 0.45
F C 0.42
A C 0.62
D C 0.83
G C 0.90
P C 0.88
S C 0.54
R E 0.87
V E 0.95
E E 0.96
V E 0.92
S E 0.74
G C 0.56
G C 0.77
T C 0.73
D C 0.74
N C 0.83
P C 0.89
S C 0.89
A C 0.90
P C 0.92
P C 0.79
A H 0.50
D H 0.75
F H 0.79
I H 0.88
R H 0.92
R H 0.94
V H 0.86
L H 0.92
E H 0.94
P H 0.95
L H 0.93
L H 0.92
A H 0.87
K H 0.72
I C 0.61
G C 0.86
I C 0.77
H C 0.58
Q E 0.50
Q E 0.66
T E 0.75
T E 0.81
L E 0.79
L E 0.71
R E 0.59
H C 0.50
G C 0.68
F C 0.78
Y C 0.83
P C 0.79
A C 0.78
G C 0.92
G C 0.95
G C 0.82
V E 0.79
V E 0.95
A E 0.98
T E 0.98
E E 0.96
V E 0.84
S E 0.51
P C 0.55
V C 0.47
A C 0.44
S C 0.49
F C 0.63
N C 0.79
T C 0.67
L C 0.58
Q C 0.50
L C 0.43
G C 0.49
E C 0.54
R C 0.66
G C 0.72
N C 0.50
I E 0.68
V E 0.80
Q E 0.87
M E 0.84
R E 0.75
G E 0.62
E E 0.57
V E 0.56
L E 0.49
L E 0.41
A C 0.34
G C 0.49
V C 0.66
P H 0.48
R H 0.83
H H 0.93
V H 0.93
A H 0.97
E H 0.99
R H 0.99
E H 0.98
I H 0.98
A H 0.98
T H 0.98
L H 0.94
A H 0.85
G H 0.65
S C 0.50
F C 0.60
S C 0.62
L C 0.60
H C 0.54
E C 0.48
Q C 0.47
N C 0.47
I C 0.45
H C 0.46
N C 0.47
L C 0.56
P C 0.69
R C 0.78
D C 0.81
Q C 0.90
G C 0.93
P C 0.88
G C 0.84
N C 0.59
T E 0.83
V E 0.95
S E 0.98
L E 0.98
E E 0.95
V E 0.88
E E 0.67
S C 0.67
E C 0.87
N C 0.81
I C 0.62
T E 0.56
E E 0.67
R E 0.66
F E 0.54
F C 0.50
V C 0.61
V C 0.71
G C 0.82
E C 0.81
K C 0.78
R C 0.82
V C 0.82
S C 0.78
A H 0.63
E H 0.90
V H 0.96
V H 0.89
A H 0.96
A H 0.99
Q H 1.00
L H 0.99
V H 0.99
K H 0.99
E H 1.00
V H 0.99
K H 0.98
R H 0.97
Y H 0.95
L H 0.83
A C 0.53
S C 0.71
T C 0.82
A C 0.71
A C 0.55
V C 0.46
G H 0.65
E H 0.81
Y H 0.82
L H 0.85
A H 0.90
D H 0.94
Q H 0.95
L H 0.97
V H 0.96
L H 0.95
P H 0.92
M H 0.87
A H 0.76
L H 0.56
A C 0.68
G C 0.83
A C 0.89
G C 0.84
E C 0.65
F E 0.50
T E 0.64
V E 0.65
A E 0.58
H E 0.49
P C 0.49
S C 0.48
C C 0.46
H C 0.57
L C 0.49
L H 0.44
T C 0.44
N C 0.45
I H 0.45
A H 0.47
V H 0.38
V H 0.51
E H 0.63
R H 0.61
F C 0.52
L C 0.62
P C 0.71
V C 0.50
R E 0.66
F E 0.74
S E 0.75
L E 0.69
I E 0.53
E C 0.60
T C 0.73
D C 0.73
G C 0.76
V C 0.78
T C 0.76
R C 0.67
V C 0.58
S C 0.55
I C 0.47
E H 0.48
G C 0.44
S C 0.47
H C 0.45
H C 0.46
H C 0.57
H C 0.71
H C 0.79
H C 0.86
END