\relax 
\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces Comparison of candidate t83-1lmb3-hand2.a2m (lines) to reference t83-1lmb3-GL.a2m (letters). Reference alignment has 86 matching columns, Candidate alignment has 84 matching columns. 151 were used (for template shift+target shift) to compute shift score. The shift score is 0.685366, with a min shift of 0, max shift of 18, and mean of 1.874557. Optimal subalignment has 131 matching columns, with 58 paired matches. 116 were used (for template shift+target shift) to compute shift score. Optimum shift score is 0.805556, with a min shift of 0, max shift of 0, and mean of 0.000000. Optimum achieved by removing the 26 columns indicated with dotted lines from the candidate alignment. }}{1}}