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\caption{Comparison of candidate t76-1almC-global.pw.a2m.gz (lines) to reference t76-1almC-GL.a2m (letters).
Reference alignment has 94 matching columns,
Candidate alignment has 139 matching columns. 188 were used (for template shift+target shift) to compute shift score.
The shift score is 0.177984, with a  min shift of 1, max shift of 45, and mean of 6.542553.
Optimal subalignment has 64 matching columns,  with 62  paired matches.  121 were used (for template shift+target shift) to compute shift score.
  Optimum shift score is 0.265385, with a min shift of 1, max shift of 2, and mean of 1.289208.
  Optimum achieved by removing
the 77 columns indicated with dotted lines from the candidate alignment.
}
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\end{figure}
\end{document}
