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\caption{Comparison of candidate t47-1mup-global.pw.a2m (lines) to reference 1mup-t47-GL.a2m (letters).
Reference alignment has 157 matching columns,
Candidate alignment has 157 matching columns. 313 were used (for template shift+target shift) to compute shift score.
The shift score is 0.994904, with a  min shift of 0, max shift of 1, and mean of 0.003185.
Optimal subalignment has 157 matching columns,  with 156  paired matches.  312 were used (for template shift+target shift) to compute shift score.
  Optimum shift score is 0.996805, with a min shift of 0, max shift of 0, and mean of 0.000000.
  Optimum achieved by removing
the 1 columns indicated with dotted lines from the candidate alignment.
}
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\end{document}
