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\caption{Comparison of candidate t46-2mcm-hand1.a2m (lines) to reference t46-2mcm-GL.a2m (letters).
Reference alignment has 89 matching columns,
Candidate alignment has 105 matching columns. 161 were used (for template shift+target shift) to compute shift score.
The shift score is 0.081340, with a  min shift of 0, max shift of 16, and mean of 7.107121.
Optimal subalignment has 33 matching columns,  with 19  paired matches.  37 were used (for template shift+target shift) to compute shift score.
  Optimum shift score is 0.204074, with a min shift of 0, max shift of 4, and mean of 0.921053.
  Optimum achieved by removing
the 86 columns indicated with dotted lines from the candidate alignment.
}
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\end{figure}
\end{document}
