chr1 ps pdf | chr2 ps pdf | chr3 ps pdf | chr4 ps pdf | chr5 ps pdf | chr6 ps pdf | chr7 ps pdf | chr8 ps pdf
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chr9 ps pdf | chr10 ps pdf | chr11 ps pdf | chr12 ps pdf | chr13 ps pdf | chr14 ps pdf | chr15 ps pdf | chr16 ps pdf
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chr17 ps pdf | chr18 ps pdf | chr19 ps pdf | chr20 ps pdf | chr21 ps pdf | chr22 ps pdf | chrX ps pdf | chrY ps pdf |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.1 | p | 207 | chr1:10307243-10307449 | 65151 | DFFA | PEX14 | AK130996 | 99286 | 0 | 0 | 0 | 66 | 0 | 0 | 207 | 0 | 0 | 0 | 0.0988 | 207 | 196 | 0 | 0 |
uc.2 | n | 207 | chr1:10442089-10442295 | 34690 | AK130996 | FLJ20321 | FLJ37118 | 273783 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0 | 0 | 0 | 0.8707 | 189 | 189 | 0 | 0 |
uc.3 | p | 225 | chr1:10460711-10460935 | 53312 | AK130996 | FLJ20321 | FLJ37118 | 255143 | 0 | 0 | 0 | 222 | 0 | 0 | 225 | 0 | 0 | 0 | 0.1818 | 225 | 212 | 0 | 0 |
uc.4 | n | 359 | chr1:10467795-10468153 | 4286 | FLJ20321 | \N | FLJ37118 | 247925 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 359 | 0 | 0 | 0.4531 | 359 | 347 | 359 | 287 |
uc.5 | n | 214 | chr1:10490897-10491110 | 27388 | FLJ20321 | \N | FLJ37118 | 224968 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 214 | 0.0574 | 213 | 212 | 200 | 179 |
uc.6 | p | 301 | chr1:10504667-10504967 | 41158 | FLJ20321 | \N | FLJ37118 | 211111 | 0 | 0 | 0 | 301 | 0 | 0 | 0 | 0 | 0 | 301 | 0.2363 | 301 | 288 | 279 | 237 |
uc.7 | p | 256 | chr1:10545679-10545934 | 82170 | FLJ20321 | \N | FLJ37118 | 170144 | 0 | 0 | 0 | 235 | 0 | 0 | 0 | 0 | 0 | 256 | 0.2663 | 256 | 247 | 0 | 0 |
uc.8 | n | 216 | chr1:10561364-10561579 | 97855 | FLJ20321 | \N | FLJ37118 | 154499 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 216 | 0.2285 | 207 | 202 | 207 | 172 |
uc.9 | n | 202 | chr1:10634956-10635157 | 171447 | FLJ20321 | \N | FLJ37118 | 80921 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0.0222 | 202 | 195 | 0 | 0 |
uc.10 | n | 275 | chr1:10675120-10675394 | 211611 | FLJ20321 | \N | FLJ37118 | 40684 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 275 | 0.0177 | 275 | 273 | 275 | 250 |
uc.12 | p | 201 | chr1:35077889-35078089 | 68766 | FLJ23151 | SFPQ | ZNF262 | 140539 | 0 | 0 | 0 | 201 | 0 | 0 | 201 | 0 | 0 | 0 | 0.6008 | 201 | 189 | 201 | 110 |
uc.13 | e | 237 | chr1:35786852-35787088 | 36769 | EIF2C4 | EIF2C1 | EIF2C3 | 36892 | 137 | 137 | 197 | 199 | 0 | 137 | 100 | 0 | 0 | 0 | 0.1805 | 201 | 162 | 160 | 134 |
uc.14 | p | 213 | chr1:37908298-37908510 | 5531 | CGI-94 | \N | POU3F1 | 15061 | 0 | 0 | 0 | 10 | 0 | 0 | 0 | 0 | 213 | 0 | 0.3971 | 213 | 185 | 0 | 0 |
uc.15 | n | 233 | chr1:37974370-37974602 | 48625 | POU3F1 | \N | RRAGC | 742565 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 233 | 0.4661 | 233 | 229 | 197 | 183 |
uc.16 | p | 211 | chr1:38041493-38041703 | 115748 | POU3F1 | \N | RRAGC | 675464 | 0 | 0 | 0 | 24 | 0 | 0 | 0 | 0 | 0 | 211 | 0.0929 | 211 | 180 | 0 | 0 |
uc.17 | n | 237 | chr1:38215445-38215681 | 289700 | POU3F1 | \N | RRAGC | 501486 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 237 | 0.3543 | 237 | 171 | 0 | 0 |
uc.18 | n | 238 | chr1:44128955-44129192 | 29316 | DMAP1 | PRNPIP | FLJ10597 | 382114 | 0 | 0 | 0 | 0 | 0 | 0 | 238 | 0 | 0 | 0 | 0.214 | 224 | 209 | 0 | 0 |
uc.19 | n | 256 | chr1:44403606-44403861 | 169431 | PRNPIP | \N | FLJ10597 | 107445 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 256 | 0.8574 | 256 | 244 | 0 | 0 |
uc.20 | p | 269 | chr1:44415666-44415934 | 181491 | PRNPIP | \N | FLJ10597 | 95372 | 0 | 0 | 0 | 25 | 0 | 0 | 0 | 0 | 0 | 269 | 0.7435 | 269 | 239 | 0 | 0 |
uc.21 | n | 235 | chr1:48482903-48483137 | 175140 | SPATA6 | FLJ14442 | FLJ11588 | 80321 | 0 | 0 | 0 | 0 | 0 | 0 | 235 | 0 | 0 | 0 | 0.1828 | 235 | 223 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.22 | n | 308 | chr1:50376149-50376456 | 119188 | DMRTA2 | FAF1 | LOC51336 | 413691 | 0 | 0 | 0 | 0 | 0 | 0 | 308 | 0 | 0 | 0 | 0.1317 | 308 | 300 | 284 | 179 |
uc.23 | n | 229 | chr1:50405695-50405923 | 148734 | DMRTA2 | FAF1 | LOC51336 | 384224 | 0 | 0 | 0 | 0 | 0 | 0 | 229 | 0 | 0 | 0 | 0.025 | 229 | 226 | 152 | 112 |
uc.24 | n | 336 | chr1:50469063-50469398 | 212102 | DMRTA2 | FAF1 | LOC51336 | 320749 | 0 | 0 | 0 | 0 | 0 | 0 | 336 | 0 | 0 | 0 | 0.2441 | 336 | 331 | 0 | 0 |
uc.25 | n | 235 | chr1:50535952-50536186 | 278991 | DMRTA2 | FAF1 | LOC51336 | 253961 | 0 | 0 | 0 | 0 | 0 | 0 | 235 | 0 | 0 | 0 | 0.162 | 235 | 233 | 77 | 54 |
uc.26 | n | 212 | chr1:62739563-62739774 | 38822 | AUTL1 | \N | FOXD3 | 419268 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 212 | 0.2032 | 212 | 212 | 212 | 191 |
uc.27 | n | 290 | chr1:62739797-62740086 | 39056 | AUTL1 | \N | FOXD3 | 418956 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 290 | 0.0501 | 290 | 290 | 290 | 273 |
uc.28 | e | 355 | chr1:70066629-70066983 | 25453 | FLJ20331 | SFRS11 | DKFZP566D1346 | 29852 | 355 | 181 | 355 | 355 | 355 | 0 | 355 | 0 | 0 | 0 | 0.0883 | 355 | 340 | 167 | 132 |
uc.29 | n | 219 | chr1:87244976-87245194 | 11120 | LMO4 | \N | AF118089 | 1371952 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 219 | 0.0045 | 219 | 219 | 219 | 209 |
uc.30 | n | 243 | chr1:87451593-87451835 | 217737 | LMO4 | \N | AF118089 | 1165311 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 243 | 0.2468 | 243 | 239 | 0 | 0 |
uc.31 | n | 253 | chr1:88395168-88395420 | 1161312 | LMO4 | \N | AF118089 | 221726 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 253 | 0.0118 | 168 | 165 | 103 | 92 |
uc.33 | e | 312 | chr1:96743538-96743849 | 9890 | BC030757 | PTBP2 | DPYD | 271253 | 34 | 36 | 34 | 269 | 0 | 34 | 312 | 0 | 0 | 0 | 0.3978 | 252 | 251 | 201 | 124 |
uc.34 | e | 208 | chr1:96751973-96752180 | 18325 | BC030757 | PTBP2 | DPYD | 262922 | 176 | 0 | 208 | 208 | 176 | 0 | 0 | 0 | 32 | 0 | 0.0164 | 208 | 204 | 62 | 31 |
uc.35 | p | 205 | chr1:97465205-97465409 | 713056 | PTBP2 | DPYD | AK092728 | 506426 | 0 | 0 | 0 | 165 | 0 | 0 | 205 | 0 | 0 | 0 | 0.2712 | 205 | 186 | 0 | 0 |
uc.36 | p | 264 | chr1:108587040-108587303 | 36279 | FLJ30525 | FLJ10330 | FLJ35838 | 24296 | 0 | 0 | 158 | 264 | 0 | 0 | 264 | 0 | 0 | 0 | 0.1423 | 264 | 258 | 0 | 0 |
uc.37 | e | 202 | chr1:114578780-114578981 | 41876 | AMPD1 | D1S155E | FLJ21168 | 35142 | 93 | 102 | 202 | 202 | 0 | 93 | 202 | 0 | 0 | 0 | 0.9019 | 142 | 129 | 74 | 48 |
uc.38 | n | 224 | chr1:161127332-161127555 | 614407 | CDCA1 | \N | PBX1 | 588881 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0.0202 | 224 | 195 | 0 | 0 |
uc.39 | n | 356 | chr1:161210912-161211267 | 697987 | CDCA1 | \N | PBX1 | 505169 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 356 | 0.3389 | 356 | 338 | 262 | 208 |
uc.40 | p | 247 | chr1:161825339-161825585 | 1312414 | CDCA1 | PBX1 | LMX1A | 534716 | 0 | 0 | 0 | 134 | 0 | 0 | 247 | 0 | 0 | 0 | 0.0252 | 141 | 132 | 0 | 0 |
uc.41 | n | 216 | chr1:210655265-210655480 | 151959 | RPS6KC1 | \N | PROX1 | 562303 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 216 | 0.0124 | 216 | 212 | 194 | 137 |
uc.42 | n | 266 | chr1:212945530-212945795 | 93884 | AF155110 | \N | USH2A | 457996 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 266 | 0.0594 | 266 | 265 | 197 | 167 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.43 | n | 257 | chr1:240842759-240843015 | 232641 | SDCCAG8 | AKT3 | ZNF238 | 320290 | 0 | 0 | 0 | 0 | 0 | 0 | 257 | 0 | 0 | 0 | 0.1236 | 257 | 251 | 0 | 0 |
uc.44 | e | 230 | chr1:241164431-241164660 | 211234 | AKT3 | ZNF238 | AK124614 | 9695 | 230 | 191 | 230 | 230 | 0 | 230 | 0 | 0 | 0 | 0 | 0.0586 | 230 | 218 | 230 | 144 |
uc.45 | e | 203 | chr1:241963410-241963612 | 9728 | LOC116228 | HNRPU | AK095945 | 115772 | 203 | 0 | 203 | 203 | 198 | 0 | 0 | 5 | 5 | 0 | 0.1298 | 203 | 186 | 0 | 0 |
uc.46 | e | 217 | chr1:241964327-241964543 | 10645 | LOC116228 | HNRPU | AK095945 | 114841 | 203 | 203 | 203 | 217 | 149 | 54 | 14 | 0 | 0 | 0 | 0.6011 | 210 | 204 | 217 | 128 |
uc.47 | n | 227 | chr2:7796390-7796616 | 590426 | RNF144 | \N | AK125905 | 212606 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 227 | 0.0531 | 227 | 226 | 167 | 123 |
uc.48 | e | 298 | chr2:20462845-20463142 | 53461 | SDC1 | PUM2 | ARHB | 168596 | 237 | 237 | 244 | 258 | 0 | 237 | 298 | 0 | 0 | 0 | 0.3291 | 292 | 285 | 292 | 181 |
uc.49 | e | 207 | chr2:33787944-33788150 | 23748 | RASGRP3 | AK074867 | AK057470 | 137707 | 207 | 178 | 207 | 181 | 0 | 178 | 29 | 0 | 0 | 0 | 0.8197 | 207 | 179 | 207 | 144 |
uc.50 | e | 222 | chr2:38950836-38951057 | 14775 | GALM | SFRS7 | GEMIN6 | 28836 | 222 | 222 | 222 | 222 | 160 | 28 | 222 | 0 | 0 | 0 | 0.4063 | 222 | 212 | 0 | 0 |
uc.51 | n | 207 | chr2:57947093-57947299 | 1359250 | AB067499 | \N | VRK2 | 301060 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0.2689 | 207 | 207 | 0 | 0 |
uc.52 | n | 274 | chr2:59082720-59082993 | 639695 | FANCL | \N | BCL11A | 1569842 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 274 | 0.0871 | 274 | 270 | 0 | 0 |
uc.53 | n | 232 | chr2:59107845-59108076 | 664820 | FANCL | \N | BCL11A | 1544759 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 232 | 0.1151 | 232 | 225 | 0 | 0 |
uc.54 | n | 209 | chr2:59173937-59174145 | 730912 | FANCL | \N | BCL11A | 1478690 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209 | 0.014 | 209 | 206 | 0 | 0 |
uc.55 | n | 240 | chr2:59721112-59721351 | 1278087 | FANCL | \N | BCL11A | 931484 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | 0.1186 | 240 | 227 | 0 | 0 |
uc.56 | n | 202 | chr2:59922365-59922566 | 1479340 | FANCL | \N | BCL11A | 730269 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0.2733 | 202 | 201 | 0 | 0 |
uc.57 | n | 246 | chr2:60113774-60114019 | 1670749 | FANCL | \N | BCL11A | 538816 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 246 | 0.0294 | 0 | 0 | 184 | 138 |
uc.58 | n | 203 | chr2:60272497-60272699 | 1829472 | FANCL | \N | BCL11A | 380136 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 203 | 0.4592 | 203 | 203 | 203 | 184 |
uc.59 | n | 220 | chr2:60272917-60273136 | 1829892 | FANCL | \N | BCL11A | 379699 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 220 | 0.4273 | 220 | 211 | 178 | 104 |
uc.60 | n | 217 | chr2:60416094-60416310 | 1973069 | FANCL | \N | BCL11A | 236525 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 217 | 0.0137 | 137 | 119 | 133 | 118 |
uc.61 | e | 326 | chr2:60662107-60662432 | 2219082 | FANCL | BCL11A | PAPOLG | 295706 | 326 | 82 | 326 | 326 | 0 | 326 | 326 | 0 | 0 | 0 | 0.0181 | 326 | 304 | 326 | 250 |
uc.62 | e | 234 | chr2:60755216-60755449 | 2312191 | FANCL | BCL11A | PAPOLG | 202689 | 87 | 5 | 87 | 222 | 87 | 0 | 0 | 147 | 0 | 0 | 0.0508 | 37 | 26 | 222 | 152 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.63 | e | 278 | chr2:61727035-61727312 | 54511 | USP34 | XPO1 | AK023367 | 310413 | 152 | 0 | 152 | 276 | 0 | 0 | 278 | 0 | 0 | 0 | 0.0195 | 278 | 266 | 117 | 69 |
uc.64 | p | 245 | chr2:63168625-63168869 | 460614 | TMEM17 | NACSIN | OTX1 | 83657 | 0 | 0 | 245 | 245 | 0 | 0 | 245 | 0 | 0 | 0 | 0.2002 | 245 | 244 | 210 | 136 |
uc.65 | n | 212 | chr2:66273125-66273336 | 639280 | SPRED2 | \N | MEIS1 | 363729 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 212 | 0.0783 | 212 | 201 | 0 | 0 |
uc.66 | n | 247 | chr2:73149541-73149787 | 13526 | EMX1 | SFXN5 | GAF1 | 125259 | 0 | 0 | 0 | 0 | 0 | 0 | 247 | 0 | 0 | 0 | 0.0707 | 247 | 229 | 0 | 0 |
uc.67 | n | 217 | chr2:104358126-104358342 | 1302855 | FLJ30294 | \N | POU3F3 | 735026 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 217 | 0.1225 | 217 | 215 | 119 | 89 |
uc.68 | n | 255 | chr2:144125491-144125745 | 114847 | KYNU | ARHGAP15 | AK126774 | 782131 | 0 | 0 | 0 | 0 | 0 | 0 | 255 | 0 | 0 | 0 | 0.4332 | 255 | 255 | 221 | 169 |
uc.69 | n | 301 | chr2:144322879-144323179 | 312235 | KYNU | ARHGAP15 | AK126774 | 584697 | 0 | 0 | 0 | 0 | 0 | 0 | 301 | 0 | 0 | 0 | 0.1277 | 145 | 145 | 0 | 0 |
uc.70 | p | 237 | chr2:144648108-144648344 | 637464 | KYNU | ARHGAP15 | AK126774 | 259532 | 0 | 0 | 0 | 237 | 0 | 0 | 237 | 0 | 0 | 0 | 0.0567 | 237 | 234 | 237 | 181 |
uc.71 | n | 248 | chr2:144923625-144923872 | 12536 | AK126774 | BC017741 | ZFHX1B | 432481 | 0 | 0 | 0 | 0 | 0 | 0 | 248 | 0 | 0 | 0 | 0.2838 | 248 | 242 | 129 | 83 |
uc.72 | n | 407 | chr2:144925741-144926147 | 14652 | AK126774 | BC017741 | ZFHX1B | 430206 | 0 | 0 | 0 | 0 | 0 | 0 | 407 | 0 | 0 | 0 | 0.1375 | 407 | 407 | 407 | 350 |
uc.73 | p | 201 | chr2:144973082-144973282 | 61993 | AK126774 | BC017741 | ZFHX1B | 383071 | 0 | 0 | 0 | 181 | 0 | 0 | 201 | 0 | 0 | 0 | 0.2973 | 178 | 175 | 177 | 124 |
uc.74 | p | 538 | chr2:145036732-145037269 | 125643 | AK126774 | BC017741 | ZFHX1B | 319084 | 0 | 0 | 537 | 0 | 0 | 0 | 538 | 0 | 0 | 0 | 0.1131 | 538 | 537 | 217 | 194 |
uc.75 | e | 236 | chr2:145356619-145356854 | 55811 | BC017741 | ZFHX1B | AK098835 | 72593 | 236 | 0 | 236 | 236 | 236 | 0 | 0 | 0 | 0 | 0 | 0.319 | 228 | 228 | 224 | 194 |
uc.76 | n | 335 | chr2:145371902-145372236 | 71094 | BC017741 | ZFHX1B | AK098835 | 57211 | 0 | 0 | 0 | 7 | 0 | 0 | 335 | 0 | 0 | 0 | 0.5486 | 335 | 330 | 216 | 172 |
uc.77 | e | 296 | chr2:145396534-145396829 | 95726 | BC017741 | ZFHX1B | AK098835 | 32618 | 296 | 0 | 296 | 296 | 296 | 0 | 296 | 0 | 0 | 0 | 0.4681 | 296 | 294 | 262 | 226 |
uc.78 | n | 248 | chr2:145399123-145399370 | 98315 | BC017741 | ZFHX1B | AK098835 | 30077 | 0 | 0 | 0 | 0 | 0 | 0 | 248 | 0 | 0 | 0 | 0.4486 | 248 | 236 | 110 | 83 |
uc.79 | p | 295 | chr2:145407946-145408240 | 107138 | BC017741 | ZFHX1B | AK098835 | 21207 | 0 | 0 | 0 | 21 | 0 | 0 | 295 | 0 | 0 | 0 | 0.3429 | 295 | 293 | 0 | 0 |
uc.80 | n | 294 | chr2:145411621-145411914 | 110813 | BC017741 | ZFHX1B | AK098835 | 17533 | 0 | 0 | 0 | 0 | 0 | 0 | 294 | 0 | 0 | 0 | 0.0151 | 294 | 291 | 0 | 0 |
uc.81 | n | 211 | chr2:147344834-147345044 | 1856184 | ZFHX1B | \N | ACVR2 | 1467909 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 211 | 0.0947 | 211 | 209 | 211 | 159 |
uc.82 | n | 210 | chr2:156929644-156929853 | 78091 | AK096400 | \N | NR4A2 | 453642 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 210 | 0.192 | 210 | 208 | 177 | 122 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.83 | n | 296 | chr2:157194172-157194467 | 342619 | AK096400 | \N | NR4A2 | 189028 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 296 | 0.0062 | 296 | 295 | 296 | 275 |
uc.84 | p | 209 | chr2:157397251-157397459 | 5522 | NR4A2 | \N | GPD2 | 97307 | 209 | 0 | 209 | 202 | 0 | 0 | 0 | 209 | 0 | 0 | 0.0991 | 209 | 199 | 0 | 0 |
uc.85 | n | 248 | chr2:157753959-157754206 | 111497 | GPD2 | \N | GALNT5 | 562678 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 248 | 0.1195 | 248 | 247 | 248 | 230 |
uc.86 | n | 340 | chr2:157862655-157862994 | 220193 | GPD2 | \N | GALNT5 | 453890 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 340 | 0.4349 | 340 | 338 | 0 | 0 |
uc.87 | n | 290 | chr2:158102814-158103103 | 460352 | GPD2 | \N | GALNT5 | 213781 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 290 | 0.6705 | 290 | 281 | 276 | 174 |
uc.88 | n | 312 | chr2:162297586-162297897 | 2359 | TANK | \N | PSMD14 | 69700 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 312 | 0 | 0.0095 | 272 | 260 | 272 | 219 |
uc.89 | p | 307 | chr2:162441217-162441523 | 145990 | TANK | PSMD14 | TBR1 | 33918 | 0 | 0 | 0 | 295 | 0 | 0 | 307 | 0 | 0 | 0 | 0.1304 | 307 | 303 | 0 | 0 |
uc.90 | e | 206 | chr2:162475571-162475776 | 4800 | PSMD14 | TBR1 | AK095511 | 17152 | 206 | 206 | 206 | 206 | 0 | 206 | 0 | 0 | 0 | 0 | 0.1748 | 206 | 199 | 206 | 168 |
uc.91 | n | 207 | chr2:163247566-163247772 | 36264 | GCG | FAP | MDA5 | 78361 | 0 | 0 | 7 | 0 | 0 | 0 | 207 | 0 | 0 | 0 | 0.5494 | 0 | 0 | 25 | 14 |
uc.92 | n | 309 | chr2:164653223-164653531 | 755438 | KCNH7 | \N | FIGN | 13137 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 309 | 0.0809 | 309 | 308 | 309 | 269 |
uc.93 | n | 263 | chr2:164864451-164864713 | 193762 | FIGN | \N | GRB14 | 687163 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 263 | 0.0007 | 263 | 262 | 249 | 194 |
uc.94 | n | 200 | chr2:165046714-165046913 | 376025 | FIGN | \N | GRB14 | 504963 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 200 | 0.0207 | 200 | 199 | 194 | 142 |
uc.95 | p | 251 | chr2:171774074-171774324 | 452 | AK123485 | \N | GAD1 | 101291 | 0 | 0 | 244 | 251 | 0 | 0 | 0 | 251 | 0 | 0 | 0.1473 | 251 | 243 | 251 | 235 |
uc.96 | p | 261 | chr2:173023218-173023478 | 69928 | SLC25A12 | HAT1 | DLX1 | 129306 | 0 | 0 | 0 | 145 | 0 | 0 | 261 | 0 | 0 | 0 | 0.0539 | 261 | 250 | 0 | 0 |
uc.97 | e | 442 | chr2:173025175-173025616 | 71885 | SLC25A12 | HAT1 | DLX1 | 127168 | 442 | 112 | 442 | 116 | 0 | 105 | 337 | 0 | 0 | 0 | 0.2843 | 442 | 432 | 442 | 331 |
uc.98 | n | 238 | chr2:173159062-173159299 | 2118 | DLX1 | \N | DLX2 | 7705 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 238 | 0 | 0.1343 | 238 | 236 | 237 | 179 |
uc.99 | n | 398 | chr2:173160925-173161322 | 3981 | DLX1 | \N | DLX2 | 5682 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 398 | 0 | 0.065 | 398 | 395 | 398 | 348 |
uc.100 | n | 207 | chr2:174317324-174317530 | 197164 | RAPGEF4 | ZAK | CDCA7 | 104593 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0 | 0 | 0 | 0.0282 | 207 | 207 | 92 | 83 |
uc.101 | e | 254 | chr2:174977025-174977278 | 204375 | M19503 | SP3 | AK095037 | 77599 | 254 | 254 | 254 | 254 | 188 | 66 | 0 | 0 | 0 | 0 | 0.3511 | 254 | 246 | 233 | 142 |
uc.102 | e | 338 | chr2:175148953-175149290 | 91488 | AK095037 | PTD004 | AK128215 | 252419 | 95 | 97 | 95 | 226 | 0 | 95 | 243 | 0 | 0 | 0 | 0.1274 | 338 | 332 | 335 | 249 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.103 | p | 233 | chr2:175172216-175172448 | 114751 | AK095037 | PTD004 | AK128215 | 229261 | 0 | 0 | 0 | 233 | 0 | 0 | 233 | 0 | 0 | 0 | 0.1949 | 233 | 220 | 196 | 166 |
uc.104 | n | 216 | chr2:175189478-175189693 | 132013 | AK095037 | PTD004 | AK128215 | 212016 | 0 | 0 | 0 | 0 | 0 | 0 | 216 | 0 | 0 | 0 | 0.2721 | 216 | 210 | 216 | 132 |
uc.105 | n | 223 | chr2:175192331-175192553 | 134866 | AK095037 | PTD004 | AK128215 | 209156 | 0 | 0 | 0 | 0 | 0 | 0 | 223 | 0 | 0 | 0 | 0.0371 | 223 | 221 | 167 | 122 |
uc.106 | p | 206 | chr2:175227967-175228172 | 170502 | AK095037 | PTD004 | AK128215 | 173537 | 0 | 0 | 0 | 37 | 0 | 0 | 206 | 0 | 0 | 0 | 0.7216 | 206 | 199 | 0 | 0 |
uc.107 | n | 237 | chr2:175410152-175410388 | 5313 | AK128215 | \N | CIR | 5035 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 237 | 237 | 0 | 0.0299 | 154 | 142 | 0 | 0 |
uc.108 | n | 374 | chr2:177142901-177143274 | 73365 | KIAA1715 | \N | HOXD13 | 16801 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 374 | 0.1367 | 314 | 310 | 374 | 355 |
uc.109 | n | 224 | chr2:177705882-177706105 | 678 | BC013438 | \N | hnRNPA3 | 573966 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0 | 0 | 0.2664 | 224 | 222 | 0 | 0 |
uc.110 | n | 243 | chr2:237358132-237358374 | 37490 | CENTG2 | \N | GBX2 | 2843 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 243 | 0 | 0.3266 | 243 | 228 | 32 | 18 |
uc.111 | p | 296 | chr3:9446461-9446756 | 32708 | AK128398 | \N | AB051544 | 3920 | 225 | 225 | 246 | 296 | 0 | 0 | 0 | 296 | 0 | 0 | 0.0018 | 0 | 0 | 0 | 0 |
uc.483 | p | 402 | chr3:17567733-17568134 | 351576 | AK125129 | TBC1D5 | SATB1 | 797109 | 0 | 0 | 0 | 41 | 0 | 0 | 402 | 0 | 0 | 0 | 0.0344 | 402 | 400 | 402 | 334 |
uc.112 | n | 346 | chr3:18144568-18144913 | 387164 | TBC1D5 | \N | SATB1 | 220330 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 346 | 0.1555 | 338 | 337 | 338 | 299 |
uc.113 | p | 247 | chr3:18651408-18651654 | 196199 | SATB1 | \N | KCNH8 | 513366 | 0 | 0 | 0 | 22 | 0 | 0 | 0 | 0 | 0 | 247 | 0.0782 | 247 | 215 | 0 | 0 |
uc.114 | n | 294 | chr3:18819454-18819747 | 364245 | SATB1 | \N | KCNH8 | 345273 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 294 | 0.1157 | 294 | 280 | 291 | 195 |
uc.115 | n | 219 | chr3:19009162-19009380 | 553953 | SATB1 | \N | KCNH8 | 155640 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 219 | 0.2977 | 219 | 215 | 0 | 0 |
uc.116 | n | 206 | chr3:70499494-70499699 | 548937 | MITF | \N | AK125942 | 96119 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 206 | 0.0018 | 206 | 200 | 206 | 152 |
uc.117 | n | 251 | chr3:70792683-70792933 | 192800 | AK125942 | \N | FOXP1 | 136271 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 251 | 0.4338 | 251 | 245 | 251 | 218 |
uc.118 | n | 219 | chr3:70792935-70793153 | 193052 | AK125942 | \N | FOXP1 | 136051 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 219 | 0.1466 | 219 | 217 | 74 | 41 |
uc.119 | n | 301 | chr3:115754368-115754668 | 40423 | AF116655 | ZNF288 | AF119886 | 405251 | 0 | 0 | 0 | 0 | 0 | 0 | 301 | 0 | 0 | 0 | 0.2937 | 300 | 292 | 0 | 0 |
uc.120 | p | 270 | chr3:115755940-115756209 | 41995 | AF116655 | ZNF288 | AF119886 | 403710 | 0 | 0 | 0 | 263 | 0 | 0 | 270 | 0 | 0 | 0 | 0.0063 | 270 | 260 | 0 | 0 |
uc.121 | n | 293 | chr3:115896375-115896667 | 97686 | ZNF288 | \N | AF119886 | 263252 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 293 | 0.3077 | 293 | 288 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.122 | n | 215 | chr3:115932792-115933006 | 134103 | ZNF288 | \N | AF119886 | 226913 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 215 | 0.1466 | 215 | 203 | 0 | 0 |
uc.123 | n | 492 | chr3:138304453-138304944 | 253619 | MGC34923 | \N | SOX14 | 499543 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 492 | 0.0814 | 492 | 482 | 483 | 432 |
uc.124 | n | 287 | chr3:138369353-138369639 | 318519 | MGC34923 | \N | SOX14 | 434848 | 0 | 0 | 0 | 9 | 0 | 0 | 0 | 0 | 0 | 287 | 0.064 | 287 | 284 | 266 | 243 |
uc.125 | n | 265 | chr3:138389226-138389490 | 338392 | MGC34923 | \N | SOX14 | 414997 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 | 0.0714 | 265 | 261 | 243 | 156 |
uc.126 | n | 271 | chr3:138446557-138446827 | 395723 | MGC34923 | \N | SOX14 | 357660 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 271 | 0.027 | 271 | 271 | 257 | 237 |
uc.127 | n | 272 | chr3:148351617-148351888 | 768212 | PLSCR1 | \N | ZIC4 | 74353 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 272 | 0.4969 | 272 | 267 | 272 | 222 |
uc.128 | p | 299 | chr3:148370547-148370845 | 787142 | PLSCR1 | \N | ZIC4 | 55396 | 0 | 0 | 0 | 201 | 0 | 0 | 0 | 0 | 0 | 299 | 0.0517 | 299 | 295 | 299 | 238 |
uc.129 | e | 212 | chr3:153485296-153485507 | 105607 | AY358260 | MBNL1 | P2RY1 | 388137 | 54 | 55 | 55 | 166 | 0 | 54 | 212 | 0 | 0 | 0 | 0.6306 | 212 | 181 | 212 | 204 |
uc.130 | p | 224 | chr3:159097487-159097710 | 457554 | BC029129 | \N | SHOX2 | 37047 | 0 | 0 | 0 | 224 | 0 | 0 | 0 | 0 | 0 | 224 | 0.0406 | 224 | 220 | 224 | 202 |
uc.131 | n | 207 | chr3:159310953-159311159 | 156935 | AF257098 | MGC12197 | MLF1 | 298736 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0 | 0 | 0 | 0.2111 | 207 | 203 | 207 | 160 |
uc.132 | n | 208 | chr3:159347072-159347279 | 193054 | AF257098 | MGC12197 | MLF1 | 262616 | 0 | 0 | 0 | 0 | 0 | 0 | 208 | 0 | 0 | 0 | 0.0442 | 208 | 203 | 208 | 122 |
uc.133 | n | 277 | chr3:159347391-159347667 | 193373 | AF257098 | MGC12197 | MLF1 | 262228 | 0 | 0 | 0 | 0 | 0 | 0 | 277 | 0 | 0 | 0 | 0.2992 | 277 | 275 | 221 | 202 |
uc.134 | p | 211 | chr3:159566817-159567027 | 412799 | AF257098 | MGC12197 | MLF1 | 42868 | 0 | 0 | 211 | 211 | 0 | 0 | 211 | 0 | 0 | 0 | 0.0323 | 211 | 203 | 211 | 193 |
uc.135 | e | 201 | chr3:170155196-170155396 | 1021196 | GOLPH4 | EVI1 | ARPM1 | 650229 | 201 | 201 | 201 | 201 | 0 | 201 | 201 | 0 | 0 | 0 | 0.2597 | 201 | 198 | 201 | 137 |
uc.136 | p | 347 | chr3:170514865-170515211 | 94639 | EVI1 | AK096400 | ARPM1 | 290414 | 0 | 0 | 0 | 230 | 0 | 0 | 347 | 0 | 0 | 0 | 0.3433 | 347 | 341 | 0 | 0 |
uc.137 | n | 385 | chr3:181757770-181758154 | 101240 | TTC14 | AL122120 | FXR1 | 193220 | 0 | 0 | 0 | 0 | 0 | 0 | 385 | 0 | 0 | 0 | 0.1278 | 385 | 382 | 0 | 0 |
uc.138 | e | 419 | chr3:186970209-186970627 | 106483 | IMP-2 | SFRS10 | ETV5 | 115887 | 93 | 277 | 345 | 419 | 0 | 0 | 419 | 0 | 0 | 0 | 0.4022 | 419 | 407 | 347 | 206 |
uc.139 | p | 338 | chr4:4587982-4588319 | 102655 | D4S234E | STX18 | MSX1 | 337647 | 0 | 0 | 0 | 224 | 0 | 0 | 338 | 0 | 0 | 0 | 0.8228 | 338 | 315 | 338 | 213 |
uc.140 | n | 223 | chr4:12760753-12760975 | 1579350 | HS3ST1 | \N | BC035054 | 359255 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 223 | 0.4441 | 223 | 210 | 0 | 0 |
uc.141 | e | 295 | chr4:24280045-24280339 | 637461 | PPARGC1A | DHX15 | SOD3 | 267763 | 295 | 295 | 295 | 295 | 295 | 0 | 0 | 0 | 0 | 0 | 0.0954 | 295 | 293 | 59 | 33 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.142 | p | 259 | chr4:41665611-41665869 | 48009 | AL831962 | PHOX2B | FLJ10525 | 186841 | 0 | 0 | 149 | 155 | 0 | 0 | 259 | 0 | 0 | 0 | 0.8389 | 259 | 258 | 259 | 240 |
uc.143 | e | 218 | chr4:77037519-77037736 | 23552 | CDKL2 | G3BP2 | VDP | 70440 | 99 | 99 | 99 | 115 | 0 | 99 | 119 | 0 | 0 | 0 | 0.0032 | 218 | 194 | 160 | 117 |
uc.144 | e | 205 | chr4:83805060-83805264 | 51837 | HNRPD | HNRPDL | MASA | 4893 | 205 | 205 | 205 | 205 | 0 | 0 | 205 | 0 | 0 | 0 | 0.2309 | 205 | 202 | 205 | 141 |
uc.145 | n | 248 | chr4:105805133-105805380 | 705339 | TACR3 | \N | CXXC4 | 46784 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 248 | 0.7572 | 248 | 245 | 213 | 192 |
uc.146 | n | 214 | chr4:112375296-112375509 | 372221 | PITX2 | \N | AK096400 | 106277 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 214 | 0.4643 | 214 | 212 | 143 | 98 |
uc.147 | p | 308 | chr4:151814010-151814317 | 57799 | MGC45428 | LRBA | MAB21L2 | 266745 | 0 | 0 | 308 | 308 | 0 | 0 | 308 | 0 | 0 | 0 | 0.7168 | 308 | 305 | 285 | 219 |
uc.148 | p | 240 | chr4:152071579-152071818 | 315368 | MGC45428 | LRBA | MAB21L2 | 9244 | 0 | 0 | 0 | 240 | 0 | 0 | 240 | 0 | 0 | 0 | 0.1198 | 240 | 239 | 240 | 164 |
uc.149 | p | 204 | chr4:152071820-152072023 | 315609 | MGC45428 | LRBA | MAB21L2 | 9039 | 0 | 0 | 0 | 204 | 0 | 0 | 204 | 0 | 0 | 0 | 0.4333 | 204 | 201 | 9 | 7 |
uc.150 | n | 262 | chr5:3565359-3565620 | 757106 | CEI | \N | AY335938 | 83285 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 262 | 0.0111 | 262 | 259 | 262 | 213 |
uc.151 | e | 214 | chr5:32425638-32425851 | 67061 | PIP3AP | ZFR | PC4 | 205321 | 214 | 101 | 214 | 214 | 0 | 99 | 116 | 0 | 0 | 0 | 0.0555 | 214 | 213 | 204 | 188 |
uc.152 | n | 201 | chr5:50351523-50351723 | 197461 | FLJ21308 | \N | ISL1 | 343119 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 201 | 0.0898 | 201 | 196 | 201 | 133 |
uc.153 | e | 240 | chr5:72279759-72279998 | 392436 | ZNF366 | TNPO1 | BC014311 | 55972 | 76 | 81 | 80 | 240 | 0 | 76 | 164 | 0 | 0 | 0 | 0.8628 | 237 | 235 | 240 | 219 |
uc.154 | p | 203 | chr5:72294088-72294290 | 5241 | TNPO1 | \N | BC014311 | 41680 | 201 | 0 | 201 | 203 | 0 | 0 | 0 | 0 | 203 | 0 | 0.3568 | 203 | 196 | 195 | 154 |
uc.155 | p | 207 | chr5:77018437-77018643 | 146043 | FLJ10904 | \N | AK128395 | 52502 | 159 | 140 | 159 | 159 | 0 | 0 | 0 | 0 | 0 | 207 | 0.355 | 93 | 86 | 207 | 138 |
uc.156 | p | 213 | chr5:77019492-77019704 | 147098 | FLJ10904 | \N | AK128395 | 51441 | 0 | 0 | 0 | 95 | 0 | 0 | 0 | 0 | 0 | 213 | 0.0653 | 213 | 212 | 179 | 120 |
uc.157 | n | 207 | chr5:77025234-77025440 | 152840 | FLJ10904 | \N | AK128395 | 45705 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0.0048 | 132 | 119 | 178 | 143 |
uc.158 | n | 224 | chr5:77224326-77224549 | 68082 | AK128395 | \N | AP3B1 | 157673 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0.3261 | 224 | 221 | 208 | 184 |
uc.159 | n | 472 | chr5:77232005-77232476 | 75761 | AK128395 | \N | AP3B1 | 149746 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 472 | 0.45 | 472 | 451 | 472 | 359 |
uc.160 | n | 322 | chr5:77352917-77353238 | 196673 | AK128395 | \N | AP3B1 | 28984 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 322 | 0.0313 | 322 | 312 | 0 | 0 |
uc.161 | p | 278 | chr5:77442602-77442879 | 286358 | AK128395 | AP3B1 | SCAMP1 | 297666 | 0 | 0 | 0 | 278 | 0 | 0 | 278 | 0 | 0 | 0 | 0.1868 | 278 | 274 | 278 | 196 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.162 | p | 218 | chr5:81231434-81231651 | 100440 | SSBP2 | \N | APG10L | 120265 | 0 | 0 | 159 | 159 | 0 | 0 | 0 | 0 | 0 | 218 | 0.029 | 128 | 107 | 0 | 0 |
uc.163 | n | 376 | chr5:87252696-87253071 | 459925 | CCNH | \N | MGC33214 | 322026 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 376 | 0.2602 | 376 | 336 | 41 | 34 |
uc.164 | n | 203 | chr5:87324478-87324680 | 531707 | CCNH | \N | MGC33214 | 250417 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 203 | 0.3847 | 203 | 178 | 203 | 120 |
uc.165 | n | 224 | chr5:87777006-87777229 | 128267 | MGC33214 | \N | MEF2C | 323009 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0.2169 | 224 | 207 | 216 | 162 |
uc.166 | p | 310 | chr5:88045878-88046187 | 397139 | MGC33214 | \N | MEF2C | 54051 | 310 | 0 | 310 | 310 | 0 | 0 | 0 | 0 | 0 | 310 | 0.0053 | 268 | 250 | 0 | 0 |
uc.167 | n | 201 | chr5:88263697-88263897 | 573 | MEF2C | \N | CETN3 | 1509714 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 201 | 0 | 0 | 0.0894 | 192 | 166 | 0 | 0 |
uc.168 | n | 220 | chr5:91012866-91013085 | 249671 | ARRDC3 | \N | AK096400 | 1613633 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 220 | 0.099 | 220 | 216 | 0 | 0 |
uc.169 | e | 204 | chr5:92995090-92995293 | 99030 | AK096400 | NR2F1 | AK126015 | 14842 | 176 | 204 | 204 | 204 | 0 | 176 | 28 | 0 | 0 | 0 | 0.5514 | 204 | 198 | 204 | 171 |
uc.170 | n | 310 | chr5:93301743-93302052 | 28138 | AK022140 | DKFZP564D172 | AK130941 | 260691 | 0 | 0 | 0 | 0 | 0 | 0 | 310 | 0 | 0 | 0 | 0.0741 | 310 | 310 | 310 | 243 |
uc.171 | n | 208 | chr5:93649920-93650127 | 128607 | DKFZP564D172 | AK130941 | AB020632 | 172636 | 0 | 0 | 0 | 0 | 0 | 0 | 208 | 0 | 0 | 0 | 0.1085 | 208 | 207 | 208 | 193 |
uc.172 | n | 218 | chr5:93724792-93725009 | 203479 | DKFZP564D172 | AK130941 | AB020632 | 97754 | 0 | 0 | 0 | 0 | 0 | 0 | 218 | 0 | 0 | 0 | 0.3155 | 218 | 212 | 29 | 20 |
uc.173 | e | 276 | chr5:133802376-133802651 | 23394 | CDKL3 | UBE2B | MGC13017 | 11369 | 276 | 276 | 276 | 276 | 276 | 0 | 0 | 0 | 0 | 0 | 0.7571 | 276 | 255 | 165 | 100 |
uc.174 | e | 260 | chr5:138719870-138720129 | 11460 | AF116688 | MATR3 | PAIP2 | 33637 | 260 | 260 | 260 | 260 | 0 | 260 | 0 | 0 | 0 | 0 | 0.0114 | 260 | 240 | 256 | 123 |
uc.175 | n | 250 | chr5:158322733-158322982 | 42959 | AF118062 | EBF | AK126678 | 183905 | 0 | 0 | 0 | 0 | 0 | 0 | 250 | 0 | 0 | 0 | 0.0239 | 250 | 247 | 250 | 218 |
uc.176 | n | 246 | chr5:167313590-167313835 | 3303273 | BC011998 | \N | AB032953 | 212433 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 246 | 0.4021 | 243 | 236 | 0 | 0 |
uc.177 | n | 257 | chr5:170398551-170398807 | 176607 | GABRP | RANBP17 | TLX3 | 318402 | 0 | 0 | 0 | 0 | 0 | 0 | 257 | 0 | 0 | 0 | 0.1919 | 257 | 242 | 0 | 0 |
uc.178 | n | 249 | chr5:170398920-170399168 | 176976 | GABRP | RANBP17 | TLX3 | 318041 | 0 | 0 | 0 | 0 | 0 | 0 | 249 | 0 | 0 | 0 | 0.3989 | 249 | 245 | 0 | 0 |
uc.179 | n | 219 | chr5:170609134-170609352 | 387190 | GABRP | RANBP17 | TLX3 | 107857 | 0 | 0 | 0 | 0 | 0 | 0 | 219 | 0 | 0 | 0 | 0.2917 | 219 | 216 | 0 | 0 |
uc.180 | n | 225 | chr5:170609411-170609635 | 387467 | GABRP | RANBP17 | TLX3 | 107574 | 0 | 0 | 0 | 0 | 0 | 0 | 225 | 0 | 0 | 0 | 0.0242 | 225 | 224 | 0 | 0 |
uc.181 | n | 278 | chr5:170610401-170610678 | 388457 | GABRP | RANBP17 | TLX3 | 106531 | 0 | 0 | 0 | 0 | 0 | 0 | 278 | 0 | 0 | 0 | 0.41 | 278 | 273 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.182 | p | 239 | chr5:170684001-170684239 | 462057 | GABRP | RANBP17 | TLX3 | 32970 | 0 | 0 | 0 | 239 | 0 | 0 | 239 | 0 | 0 | 0 | 0.1006 | 239 | 217 | 0 | 0 |
uc.183 | e | 236 | chr5:171365442-171365677 | 500343 | FGF18 | FBXW1B | STK10 | 85866 | 102 | 102 | 236 | 236 | 0 | 0 | 236 | 0 | 0 | 0 | 0.3269 | 236 | 212 | 0 | 0 |
uc.184 | e | 230 | chr5:173366215-173366444 | 341635 | LOC91272 | CPEB4 | BC034971 | 30679 | 230 | 0 | 230 | 230 | 230 | 0 | 0 | 0 | 0 | 0 | 0.263 | 135 | 134 | 136 | 96 |
uc.185 | e | 411 | chr5:178157908-178158318 | 26750 | COL23A1 | CLK4 | ZNF354A | 93878 | 411 | 135 | 411 | 411 | 0 | 91 | 320 | 0 | 0 | 0 | 0.59 | 411 | 379 | 396 | 272 |
uc.186 | e | 305 | chr5:179155889-179156193 | 9184 | RUFY1 | HNRPH1 | AK093042 | 19772 | 305 | 149 | 305 | 305 | 0 | 139 | 166 | 0 | 0 | 0 | 0.2458 | 305 | 295 | 171 | 149 |
uc.187 | n | 212 | chr6:10502663-10502874 | 182835 | OFCC1 | PAK1IP1 | TFAP2A | 3274 | 0 | 0 | 0 | 0 | 0 | 0 | 212 | 0 | 0 | 0 | 0.167 | 212 | 208 | 0 | 0 |
uc.188 | e | 215 | chr6:16407363-16407577 | 3605 | GMPR | SCA1 | RNPC6 | 982175 | 215 | 0 | 215 | 215 | 215 | 0 | 0 | 0 | 0 | 0 | 0.1711 | 213 | 211 | 0 | 0 |
uc.189 | e | 573 | chr6:36614372-36614944 | 52269 | STK38 | SFRS3 | CDKN1A | 78413 | 573 | 458 | 573 | 573 | 0 | 0 | 573 | 0 | 0 | 0 | 1e-04 | 573 | 564 | 553 | 410 |
uc.190 | n | 200 | chr6:41570295-41570494 | 204814 | AJ225109 | FOXP4 | BC009628 | 45050 | 0 | 0 | 0 | 0 | 0 | 0 | 200 | 0 | 0 | 0 | 0.6032 | 0 | 0 | 200 | 163 |
uc.191 | n | 208 | chr6:51123630-51123837 | 265118 | TFAP2B | \N | PKHD1 | 403143 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 208 | 0.0802 | 208 | 204 | 192 | 127 |
uc.192 | n | 244 | chr6:51195833-51196076 | 337321 | TFAP2B | \N | PKHD1 | 330904 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 244 | 0.3837 | 244 | 242 | 0 | 0 |
uc.193 | e | 319 | chr6:86317282-86317600 | 18082 | SNX14 | SYNCRIP | HTR1E | 1325405 | 319 | 130 | 319 | 319 | 319 | 0 | 0 | 0 | 0 | 0 | 0 | 319 | 315 | 319 | 233 |
uc.194 | e | 201 | chr6:93964662-93964862 | 2672287 | MAP3K7 | EPHA7 | MANEA | 2106148 | 126 | 108 | 129 | 126 | 0 | 126 | 75 | 0 | 0 | 0 | 0.4665 | 201 | 198 | 150 | 125 |
uc.195 | p | 273 | chr6:97708954-97709226 | 74725 | KIAA1900 | C6orf167 | POU3F2 | 1618969 | 0 | 0 | 0 | 272 | 0 | 0 | 273 | 0 | 0 | 0 | 0.0178 | 273 | 269 | 0 | 0 |
uc.196 | n | 221 | chr6:98162138-98162358 | 385487 | C6orf167 | \N | POU3F2 | 1165837 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 221 | 0.4213 | 221 | 219 | 124 | 106 |
uc.197 | n | 224 | chr6:98408397-98408620 | 631746 | C6orf167 | \N | POU3F2 | 919575 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0.1529 | 224 | 223 | 113 | 85 |
uc.198 | n | 307 | chr6:98765487-98765793 | 988836 | C6orf167 | \N | POU3F2 | 562402 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 307 | 0.0028 | 307 | 288 | 0 | 0 |
uc.199 | n | 256 | chr6:98859453-98859708 | 1082802 | C6orf167 | \N | POU3F2 | 468487 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 256 | 0.1874 | 256 | 251 | 54 | 36 |
uc.200 | n | 254 | chr6:99041131-99041384 | 1264480 | C6orf167 | \N | POU3F2 | 286811 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 254 | 0.0904 | 254 | 243 | 0 | 0 |
uc.201 | n | 240 | chr6:100097582-100097821 | 35460 | CCNC | \N | PRDM13 | 2426 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | 0 | 0 | 0.1058 | 231 | 210 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.202 | n | 230 | chr6:101019581-101019810 | 62431 | SIM1 | HELIC1 | GRIK2 | 872456 | 0 | 0 | 0 | 0 | 0 | 0 | 230 | 0 | 0 | 0 | 0.2081 | 230 | 224 | 198 | 125 |
uc.203 | e | 203 | chr6:163900992-163901194 | 255180 | PACRG | QKI | C6orf118 | 1701258 | 187 | 183 | 187 | 203 | 170 | 17 | 22 | 0 | 0 | 0 | 0.1643 | 191 | 185 | 192 | 158 |
uc.204 | n | 202 | chr7:1010242-1010443 | 66105 | LOC90637 | \N | FLJ23471 | 202009 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0.0326 | 202 | 196 | 0 | 0 |
uc.205 | n | 252 | chr7:20574105-20574356 | 3283 | SP8 | \N | SP4 | 637661 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 252 | 0 | 0 | 0.4879 | 252 | 243 | 242 | 192 |
uc.206 | n | 499 | chr7:20748081-20748579 | 177259 | SP8 | \N | SP4 | 463438 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 499 | 0.164 | 499 | 496 | 499 | 410 |
uc.207 | n | 230 | chr7:21555809-21556038 | 260158 | SP4 | DNAH11 | RAM2 | 128795 | 0 | 0 | 0 | 0 | 0 | 0 | 230 | 0 | 0 | 0 | 0.4412 | 226 | 216 | 0 | 0 |
uc.208 | e | 218 | chr7:23303942-23304159 | 30642 | BC026177 | TRA2A | AB052759 | 7598 | 0 | 218 | 142 | 218 | 0 | 0 | 218 | 0 | 0 | 0 | 0.4948 | 218 | 215 | 0 | 0 |
uc.209 | e | 250 | chr7:23304160-23304409 | 30860 | BC026177 | TRA2A | AB052759 | 7348 | 0 | 164 | 164 | 250 | 0 | 0 | 250 | 0 | 0 | 0 | 0.3143 | 250 | 246 | 188 | 129 |
uc.210 | p | 257 | chr7:26439350-26439606 | 118670 | D42038 | \N | SCAP2 | 9355 | 0 | 0 | 0 | 47 | 0 | 0 | 0 | 0 | 257 | 0 | 0.4429 | 257 | 252 | 152 | 102 |
uc.211 | n | 291 | chr7:26471744-26472034 | 151064 | D42038 | SCAP2 | HOXA1 | 403171 | 0 | 0 | 0 | 6 | 0 | 0 | 291 | 0 | 0 | 0 | 0.0472 | 291 | 287 | 255 | 191 |
uc.212 | p | 205 | chr7:26884210-26884414 | 6412 | HOXA1 | \N | HOXA3 | 3676 | 205 | 0 | 205 | 205 | 0 | 0 | 0 | 205 | 205 | 0 | 0.403 | 205 | 190 | 199 | 174 |
uc.213 | e | 201 | chr7:26925404-26925604 | 12779 | HOXA4 | HOXA5 | HOXA6 | 1783 | 143 | 156 | 201 | 201 | 48 | 95 | 0 | 58 | 58 | 0 | 0.1436 | 201 | 146 | 201 | 172 |
uc.214 | n | 243 | chr7:31144670-31144912 | 21889 | NEUROD6 | \N | LOC223075 | 154337 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 243 | 0.0007 | 243 | 215 | 161 | 138 |
uc.215 | n | 262 | chr7:41933365-41933626 | 449909 | INHBA | GLI3 | C7orf25 | 756027 | 0 | 0 | 0 | 0 | 0 | 0 | 262 | 0 | 0 | 0 | 0.0103 | 262 | 260 | 262 | 227 |
uc.216 | p | 312 | chr7:50102955-50103266 | 225327 | ZPBP | \N | ZNFN1A1 | 8175 | 0 | 0 | 0 | 94 | 0 | 0 | 0 | 312 | 0 | 0 | 0.3542 | 312 | 310 | 278 | 192 |
uc.217 | p | 221 | chr7:54378405-54378625 | 16432 | MGC33530 | \N | SEC61G | 183072 | 0 | 175 | 175 | 221 | 0 | 0 | 0 | 0 | 0 | 221 | 0.1069 | 221 | 217 | 0 | 0 |
uc.218 | p | 286 | chr7:69215092-69215377 | 3016962 | FLJ13195 | AUTS2 | AK096991 | 792645 | 0 | 0 | 0 | 182 | 0 | 0 | 286 | 0 | 0 | 0 | 0.0136 | 286 | 283 | 273 | 167 |
uc.219 | p | 210 | chr7:69392897-69393106 | 3194767 | FLJ13195 | AUTS2 | AK096991 | 614916 | 0 | 0 | 0 | 109 | 0 | 0 | 210 | 0 | 0 | 0 | 0.4622 | 210 | 206 | 0 | 0 |
uc.220 | n | 257 | chr7:96245647-96245903 | 294712 | SHFM1 | \N | DLX5 | 15539 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 257 | 0.569 | 257 | 232 | 257 | 122 |
uc.221 | p | 349 | chr7:96253032-96253380 | 302097 | SHFM1 | \N | DLX5 | 8062 | 0 | 149 | 61 | 182 | 0 | 0 | 0 | 0 | 349 | 0 | 0.7518 | 349 | 335 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.222 | n | 201 | chr7:113611674-113611874 | 498119 | PPP1R3A | FOXP2 | HIC | 504837 | 0 | 0 | 0 | 0 | 0 | 0 | 201 | 0 | 0 | 0 | 0.5102 | 201 | 201 | 201 | 169 |
uc.223 | n | 268 | chr7:113612688-113612955 | 499133 | PPP1R3A | FOXP2 | HIC | 503756 | 0 | 0 | 0 | 0 | 0 | 0 | 268 | 0 | 0 | 0 | 0.134 | 268 | 268 | 267 | 234 |
uc.224 | n | 295 | chr7:113617522-113617816 | 503967 | PPP1R3A | FOXP2 | HIC | 498895 | 0 | 0 | 0 | 0 | 0 | 0 | 295 | 0 | 0 | 0 | 0.0052 | 295 | 295 | 0 | 0 |
uc.225 | n | 201 | chr7:113627358-113627558 | 513803 | PPP1R3A | FOXP2 | HIC | 489153 | 0 | 0 | 0 | 0 | 0 | 0 | 201 | 0 | 0 | 0 | 0.1716 | 201 | 199 | 201 | 140 |
uc.226 | n | 205 | chr7:113763821-113764025 | 650266 | PPP1R3A | FOXP2 | HIC | 352686 | 0 | 0 | 0 | 0 | 0 | 0 | 205 | 0 | 0 | 0 | 0.0135 | 205 | 201 | 127 | 76 |
uc.227 | n | 231 | chr7:113849819-113850049 | 736264 | PPP1R3A | FOXP2 | HIC | 266662 | 0 | 0 | 0 | 0 | 0 | 0 | 231 | 0 | 0 | 0 | 0.0699 | 231 | 231 | 231 | 164 |
uc.228 | n | 265 | chr7:114671200-114671464 | 213182 | AK096400 | \N | TFEC | 463043 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 | 0.1057 | 265 | 264 | 265 | 191 |
uc.229 | n | 296 | chr7:114689148-114689443 | 231130 | AK096400 | \N | TFEC | 445064 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 296 | 0.1924 | 296 | 293 | 0 | 0 |
uc.230 | p | 238 | chr7:114873964-114874201 | 415946 | AK096400 | \N | TFEC | 260306 | 238 | 0 | 238 | 238 | 0 | 0 | 0 | 0 | 0 | 238 | 0.2964 | 238 | 236 | 0 | 0 |
uc.231 | n | 224 | chr7:115136620-115136843 | 678602 | AK096400 | TFEC | TES | 268280 | 0 | 0 | 0 | 0 | 0 | 0 | 224 | 0 | 0 | 0 | 0.3641 | 224 | 223 | 224 | 143 |
uc.232 | p | 247 | chr7:121499109-121499355 | 160337 | AASS | \N | CADPS2 | 14600 | 171 | 0 | 192 | 175 | 0 | 0 | 0 | 0 | 0 | 247 | 0.0803 | 230 | 198 | 62 | 38 |
uc.233 | e | 266 | chr7:150220055-150220320 | 48225 | C7orf21 | CENTG3 | ASB10 | 44205 | 0 | 60 | 0 | 266 | 0 | 0 | 266 | 0 | 0 | 0 | 0.1703 | 266 | 243 | 233 | 203 |
uc.234 | p | 272 | chr7:156229240-156229511 | 3267 | BC033117 | \N | AK130204 | 85708 | 0 | 0 | 0 | 272 | 0 | 0 | 0 | 170 | 272 | 0 | 0.4198 | 272 | 259 | 272 | 188 |
uc.235 | n | 227 | chr8:25797831-25798057 | 28598 | EBF2 | DOCK5 | AK129682 | 22591 | 0 | 0 | 0 | 0 | 0 | 0 | 227 | 0 | 0 | 0 | 0.029 | 227 | 224 | 189 | 131 |
uc.236 | n | 267 | chr8:37307753-37308019 | 503640 | FKSG2 | \N | FLJ14299 | 302565 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 267 | 0.7672 | 212 | 207 | 195 | 138 |
uc.237 | p | 468 | chr8:53187862-53188329 | 364104 | LOC115294 | ST18 | AY358213 | 308330 | 0 | 0 | 0 | 91 | 0 | 0 | 468 | 0 | 0 | 0 | 0.0459 | 465 | 462 | 415 | 293 |
uc.238 | p | 358 | chr8:53217077-53217434 | 393319 | LOC115294 | ST18 | AY358213 | 279225 | 0 | 0 | 0 | 112 | 0 | 0 | 358 | 0 | 0 | 0 | 0.403 | 358 | 358 | 358 | 275 |
uc.239 | p | 300 | chr8:59992334-59992633 | 370177 | NSMAF | AB018351 | CA8 | 1159430 | 0 | 0 | 0 | 186 | 0 | 0 | 300 | 0 | 0 | 0 | 0.3234 | 300 | 299 | 0 | 0 |
uc.240 | p | 206 | chr8:65542500-65542705 | 1367194 | FLJ31657 | \N | BHLHB5 | 360 | 0 | 0 | 0 | 206 | 0 | 0 | 0 | 206 | 0 | 0 | 0.058 | 206 | 192 | 0 | 0 |
uc.241 | n | 202 | chr8:65547091-65547292 | 2636 | BHLHB5 | \N | CYP7B1 | 11360 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0 | 0.0466 | 142 | 87 | 165 | 133 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.242 | n | 265 | chr8:66199258-66199522 | 437993 | CYP7B1 | \N | FLJ10511 | 365149 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 | 0.0202 | 265 | 265 | 265 | 161 |
uc.243 | p | 216 | chr8:77740924-77741139 | 143263 | AF130052 | ZFH4 | PXMP3 | 203980 | 0 | 0 | 216 | 0 | 0 | 0 | 216 | 0 | 0 | 0 | 0.164 | 216 | 216 | 216 | 183 |
uc.244 | n | 321 | chr8:105918932-105919252 | 361220 | ST7 | \N | ZFPM2 | 368477 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 321 | 0.0501 | 321 | 319 | 289 | 266 |
uc.245 | n | 339 | chr8:106290415-106290753 | 732703 | ST7 | ZFPM2 | OXR1 | 948302 | 0 | 0 | 0 | 0 | 0 | 0 | 339 | 0 | 0 | 0 | 0.0091 | 339 | 334 | 311 | 282 |
uc.246 | e | 284 | chr8:119079806-119080089 | 570718 | THRAP6 | EXT1 | AK096777 | 266725 | 284 | 0 | 284 | 284 | 216 | 68 | 0 | 0 | 0 | 0 | 0.2398 | 7 | 5 | 250 | 173 |
uc.247 | p | 361 | chr9:959154-959514 | 65 | DMRT1 | \N | DMRT3 | 7872 | 0 | 0 | 28 | 0 | 0 | 0 | 0 | 361 | 361 | 0 | 0.2836 | 358 | 356 | 359 | 313 |
uc.248 | n | 222 | chr9:964189-964410 | 5100 | DMRT1 | \N | DMRT3 | 2976 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 222 | 222 | 0 | 0.0641 | 0 | 0 | 114 | 76 |
uc.249 | n | 260 | chr9:8085728-8085987 | 295960 | AL137489 | \N | PTPRD | 221280 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 260 | 0.2451 | 260 | 250 | 0 | 0 |
uc.250 | n | 209 | chr9:13929910-13930118 | 689552 | MPDZ | \N | NFIB | 147254 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209 | 0.2524 | 209 | 184 | 0 | 0 |
uc.251 | n | 213 | chr9:15864309-15864521 | 363319 | PSIP1 | C9orf93 | AK092247 | 544044 | 0 | 0 | 0 | 0 | 0 | 0 | 213 | 0 | 0 | 0 | 0.2882 | 213 | 207 | 135 | 115 |
uc.252 | n | 231 | chr9:16700753-16700983 | 183021 | MGC24103 | \N | AK130915 | 74592 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 231 | 0.1862 | 231 | 227 | 106 | 89 |
uc.253 | n | 222 | chr9:17322212-17322433 | 544778 | AK130915 | C9orf39 | SH3GL2 | 246630 | 0 | 0 | 0 | 0 | 0 | 0 | 222 | 0 | 0 | 0 | 0.2229 | 195 | 185 | 222 | 177 |
uc.254 | n | 279 | chr9:23486725-23487003 | 1044252 | AK096011 | \N | ELAVL2 | 193101 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 279 | 0.1365 | 279 | 262 | 0 | 0 |
uc.255 | e | 232 | chr9:23681768-23681999 | 1239295 | AK096011 | ELAVL2 | BC046919 | 1984968 | 232 | 0 | 232 | 232 | 232 | 0 | 0 | 0 | 0 | 0 | 0.6065 | 108 | 104 | 232 | 192 |
uc.256 | e | 206 | chr9:23682234-23682439 | 1239761 | AK096011 | ELAVL2 | BC046919 | 1984528 | 206 | 13 | 206 | 206 | 206 | 0 | 0 | 0 | 0 | 0 | 0.1254 | 206 | 104 | 0 | 0 |
uc.257 | n | 264 | chr9:37205204-37205467 | 181100 | PAX5 | ZCCHC7 | GRHPR | 207220 | 0 | 0 | 0 | 0 | 0 | 0 | 264 | 0 | 0 | 0 | 0.5796 | 264 | 257 | 258 | 196 |
uc.258 | p | 201 | chr9:37314424-37314624 | 290320 | PAX5 | ZCCHC7 | GRHPR | 98063 | 0 | 0 | 0 | 147 | 0 | 0 | 201 | 0 | 0 | 0 | 0.0922 | 201 | 194 | 0 | 0 |
uc.259 | p | 308 | chr9:75084998-75085305 | 106875 | C9orf65 | \N | VPS13A | 164174 | 0 | 0 | 0 | 308 | 0 | 0 | 0 | 0 | 0 | 308 | 0.3629 | 284 | 274 | 305 | 246 |
uc.260 | n | 231 | chr9:76929543-76929773 | 527416 | PSAT1 | \N | TLE4 | 714875 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 231 | 0.1363 | 231 | 227 | 0 | 0 |
uc.261 | n | 311 | chr9:77328693-77329003 | 926566 | PSAT1 | \N | TLE4 | 315645 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 311 | 0.1064 | 311 | 306 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.262 | n | 255 | chr9:79184841-79185095 | 1386067 | TLE4 | \N | TLE1 | 470622 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 255 | 0.3434 | 255 | 250 | 0 | 0 |
uc.263 | e | 207 | chr9:82047403-82047609 | 18382 | C9orf64 | HNRPK | C9orf76 | 5206 | 207 | 207 | 207 | 207 | 0 | 44 | 163 | 0 | 0 | 0 | 0.9233 | 207 | 204 | 207 | 145 |
uc.264 | e | 267 | chr9:82047611-82047877 | 18590 | C9orf64 | HNRPK | C9orf76 | 4938 | 222 | 200 | 222 | 267 | 0 | 0 | 267 | 0 | 0 | 0 | 0.7695 | 266 | 257 | 225 | 167 |
uc.265 | e | 217 | chr9:103498309-103498525 | 427952 | ABCA1 | CDW92 | CSDUFD1 | 91764 | 192 | 170 | 192 | 175 | 0 | 170 | 47 | 0 | 0 | 0 | 0.1047 | 217 | 206 | 195 | 128 |
uc.266 | p | 243 | chr9:104758130-104758372 | 555366 | AK130032 | \N | AK023447 | 242502 | 196 | 0 | 196 | 194 | 0 | 0 | 0 | 0 | 0 | 243 | 0.1916 | 179 | 171 | 0 | 0 |
uc.267 | e | 203 | chr9:120429935-120430137 | 26799 | RBM18 | MRRF | PTGS1 | 79219 | 65 | 67 | 65 | 121 | 0 | 65 | 138 | 0 | 0 | 0 | 0.0177 | 203 | 177 | 0 | 0 |
uc.268 | p | 251 | chr9:120982873-120983123 | 16017 | PDCL | \N | MNAB | 4653 | 244 | 0 | 251 | 251 | 0 | 0 | 0 | 0 | 251 | 0 | 0.0063 | 236 | 139 | 0 | 0 |
uc.269 | n | 217 | chr9:121913982-121914198 | 395333 | AK123000 | KIAA1608 | LHX2 | 236508 | 0 | 0 | 0 | 0 | 0 | 0 | 217 | 0 | 0 | 0 | 0.0414 | 217 | 199 | 0 | 0 |
uc.270 | p | 278 | chr9:123680114-123680391 | 176786 | AB040954 | MAPKAP1 | LOC51145 | 202309 | 0 | 0 | 0 | 278 | 0 | 0 | 278 | 0 | 0 | 0 | 0.0925 | 278 | 248 | 278 | 228 |
uc.271 | p | 211 | chr9:123680397-123680607 | 177069 | AB040954 | MAPKAP1 | LOC51145 | 202093 | 0 | 0 | 0 | 211 | 0 | 0 | 211 | 0 | 0 | 0 | 0.2754 | 211 | 196 | 211 | 122 |
uc.272 | n | 213 | chr9:123808633-123808845 | 305305 | AB040954 | MAPKAP1 | LOC51145 | 73855 | 0 | 0 | 0 | 0 | 0 | 0 | 213 | 0 | 0 | 0 | 0.172 | 213 | 205 | 0 | 0 |
uc.273 | p | 321 | chr9:123893643-123893963 | 8766 | LOC51145 | PBX3 | C9orf28 | 571209 | 0 | 0 | 0 | 321 | 0 | 0 | 321 | 0 | 0 | 0 | 0.0273 | 321 | 318 | 310 | 194 |
uc.274 | p | 327 | chr9:123897916-123898242 | 13039 | LOC51145 | PBX3 | C9orf28 | 566930 | 0 | 0 | 327 | 327 | 0 | 0 | 327 | 0 | 0 | 0 | 0.046 | 327 | 323 | 258 | 217 |
uc.275 | n | 255 | chr9:123960161-123960415 | 75284 | LOC51145 | PBX3 | C9orf28 | 504757 | 0 | 0 | 0 | 0 | 0 | 0 | 255 | 0 | 0 | 0 | 1e-04 | 139 | 139 | 139 | 121 |
uc.276 | p | 432 | chr9:123981857-123982288 | 96980 | LOC51145 | PBX3 | C9orf28 | 482884 | 0 | 0 | 0 | 154 | 0 | 0 | 432 | 0 | 0 | 0 | 0.0558 | 263 | 262 | 221 | 188 |
uc.277 | p | 276 | chr9:123983755-123984030 | 98878 | LOC51145 | PBX3 | C9orf28 | 481142 | 0 | 0 | 0 | 276 | 0 | 0 | 276 | 0 | 0 | 0 | 0.0806 | 276 | 269 | 276 | 235 |
uc.278 | p | 237 | chr9:124022210-124022446 | 137333 | LOC51145 | PBX3 | C9orf28 | 442726 | 0 | 0 | 0 | 132 | 0 | 0 | 237 | 0 | 0 | 0 | 0.0843 | 237 | 234 | 237 | 212 |
uc.279 | n | 336 | chr9:124048604-124048939 | 163727 | LOC51145 | PBX3 | C9orf28 | 416233 | 0 | 0 | 0 | 0 | 0 | 0 | 336 | 0 | 0 | 0 | 0.2665 | 336 | 327 | 336 | 256 |
uc.280 | e | 220 | chr9:124054051-124054270 | 169174 | LOC51145 | PBX3 | C9orf28 | 410902 | 201 | 202 | 201 | 202 | 0 | 201 | 19 | 0 | 0 | 0 | 0.2057 | 220 | 204 | 220 | 166 |
uc.281 | p | 238 | chr9:130771570-130771807 | 29884 | BARHL1 | DDX31 | GTF3C4 | 49965 | 0 | 0 | 0 | 238 | 0 | 0 | 238 | 0 | 0 | 0 | 0 | 238 | 232 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.282 | e | 207 | chr9:135399783-135399989 | 30899 | AK128156 | GRIN1 | ANAPC2 | 26539 | 63 | 64 | 207 | 207 | 0 | 63 | 207 | 0 | 0 | 0 | 0.4641 | 207 | 185 | 207 | 172 |
uc.283 | n | 277 | chr10:49949360-49949636 | 69224 | AJ237663 | \N | ERCC6 | 61675 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 277 | 0.0084 | 277 | 268 | 277 | 226 |
uc.284 | p | 209 | chr10:49951459-49951667 | 71323 | AJ237663 | \N | ERCC6 | 59644 | 0 | 0 | 209 | 178 | 0 | 0 | 0 | 0 | 0 | 209 | 0.9361 | 209 | 199 | 0 | 0 |
uc.285 | e | 232 | chr10:69860594-69860825 | 61752 | CXXC6 | CCAR1 | C10orf24 | 71376 | 193 | 194 | 232 | 232 | 0 | 193 | 39 | 0 | 0 | 0 | 0.1377 | 232 | 231 | 231 | 189 |
uc.286 | n | 252 | chr10:76483627-76483878 | 143253 | FLJ23841 | \N | AK125693 | 16148 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 252 | 0.0827 | 252 | 244 | 206 | 144 |
uc.287 | p | 257 | chr10:76840546-76840802 | 330881 | AK024492 | \N | C10orf11 | 46319 | 0 | 0 | 0 | 68 | 0 | 0 | 0 | 0 | 0 | 257 | 0.6437 | 257 | 243 | 198 | 131 |
uc.288 | n | 223 | chr10:77071786-77072008 | 562121 | AK024492 | C10orf11 | KCNMA1 | 916468 | 0 | 0 | 0 | 0 | 0 | 0 | 223 | 0 | 0 | 0 | 0.7516 | 223 | 220 | 223 | 205 |
uc.289 | n | 254 | chr10:77335142-77335395 | 825477 | AK024492 | C10orf11 | KCNMA1 | 653081 | 0 | 0 | 0 | 0 | 0 | 0 | 254 | 0 | 0 | 0 | 0.4105 | 254 | 253 | 254 | 195 |
uc.290 | e | 206 | chr10:77386885-77387090 | 877220 | AK024492 | C10orf11 | KCNMA1 | 601386 | 0 | 60 | 0 | 60 | 0 | 0 | 206 | 0 | 0 | 0 | 0.1904 | 206 | 202 | 37 | 33 |
uc.291 | p | 231 | chr10:77628227-77628457 | 1118562 | AK024492 | C10orf11 | KCNMA1 | 360019 | 0 | 0 | 0 | 225 | 0 | 0 | 231 | 0 | 0 | 0 | 0.0396 | 231 | 225 | 158 | 134 |
uc.292 | e | 217 | chr10:98380042-98380258 | 14188 | AF338191 | MLR2 | C10orf12 | 25369 | 217 | 0 | 217 | 217 | 0 | 217 | 80 | 0 | 0 | 0 | 0.0125 | 217 | 203 | 171 | 124 |
uc.293 | n | 243 | chr10:102037256-102037498 | 62906 | HIF1AN | \N | PAX2 | 132556 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 243 | 0.3971 | 243 | 230 | 243 | 206 |
uc.294 | n | 444 | chr10:102038204-102038647 | 63854 | HIF1AN | \N | PAX2 | 131407 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 444 | 0.513 | 440 | 431 | 444 | 382 |
uc.295 | n | 209 | chr10:102039687-102039895 | 65337 | HIF1AN | \N | PAX2 | 130159 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209 | 0.024 | 209 | 201 | 209 | 180 |
uc.296 | n | 461 | chr10:102079693-102080153 | 105343 | HIF1AN | \N | PAX2 | 89901 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 461 | 0.0466 | 461 | 441 | 461 | 404 |
uc.297 | n | 364 | chr10:102083807-102084170 | 109457 | HIF1AN | \N | PAX2 | 85884 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 364 | 0.0439 | 364 | 328 | 353 | 273 |
uc.298 | n | 359 | chr10:102112245-102112603 | 137895 | HIF1AN | \N | PAX2 | 57451 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 359 | 0.5732 | 359 | 346 | 359 | 304 |
uc.299 | e | 210 | chr10:102174022-102174231 | 199672 | HIF1AN | PAX2 | C10orf6 | 162681 | 210 | 142 | 210 | 151 | 0 | 142 | 68 | 0 | 0 | 0 | 0.3314 | 208 | 180 | 179 | 148 |
uc.300 | n | 208 | chr10:102211705-102211912 | 237355 | HIF1AN | PAX2 | C10orf6 | 125000 | 0 | 0 | 0 | 0 | 0 | 0 | 208 | 0 | 0 | 0 | 0.1064 | 208 | 202 | 0 | 0 |
uc.301 | p | 284 | chr10:102232378-102232661 | 258028 | HIF1AN | PAX2 | C10orf6 | 104251 | 0 | 0 | 0 | 39 | 0 | 0 | 284 | 0 | 0 | 0 | 0.4999 | 284 | 272 | 284 | 222 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.302 | n | 341 | chr10:102643767-102644107 | 81643 | TLX1 | \N | LBX1 | 7213 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 341 | 0 | 0.4746 | 341 | 327 | 203 | 163 |
uc.303 | n | 272 | chr10:102717014-102717285 | 63709 | LBX1 | \N | BTRC | 61202 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 272 | 0.0679 | 24 | 19 | 133 | 87 |
uc.304 | p | 272 | chr10:102747091-102747362 | 93786 | LBX1 | \N | BTRC | 31125 | 0 | 0 | 0 | 190 | 0 | 0 | 0 | 0 | 0 | 272 | 0.2632 | 272 | 249 | 0 | 0 |
uc.305 | p | 305 | chr10:102876022-102876326 | 222717 | LBX1 | BTRC | AF090931 | 62482 | 0 | 0 | 305 | 0 | 0 | 0 | 305 | 0 | 0 | 0 | 0.4288 | 305 | 300 | 248 | 145 |
uc.306 | p | 224 | chr10:102876626-102876849 | 223321 | LBX1 | BTRC | AF090931 | 61959 | 0 | 0 | 224 | 0 | 0 | 0 | 224 | 0 | 0 | 0 | 0.071 | 224 | 216 | 0 | 0 |
uc.307 | p | 232 | chr10:102908570-102908801 | 255265 | LBX1 | BTRC | AF090931 | 30007 | 0 | 0 | 0 | 208 | 0 | 0 | 232 | 0 | 0 | 0 | 0.7906 | 232 | 224 | 0 | 0 |
uc.308 | p | 277 | chr10:102910399-102910675 | 257094 | LBX1 | BTRC | AF090931 | 28133 | 0 | 0 | 0 | 277 | 0 | 0 | 277 | 0 | 0 | 0 | 0.4067 | 277 | 274 | 223 | 135 |
uc.309 | n | 268 | chr10:102931618-102931885 | 278313 | LBX1 | BTRC | AF090931 | 6923 | 0 | 0 | 0 | 0 | 0 | 0 | 268 | 0 | 0 | 0 | 0.2814 | 268 | 267 | 0 | 0 |
uc.310 | n | 229 | chr10:114068810-114069038 | 197550 | ZDHHC6 | VTI1A | TCF7L2 | 305759 | 0 | 0 | 0 | 0 | 0 | 0 | 229 | 0 | 0 | 0 | 0.0354 | 229 | 228 | 224 | 158 |
uc.311 | p | 219 | chr10:119738989-119739207 | 215033 | CASC2 | C10orf84 | GPR10 | 279023 | 0 | 0 | 0 | 219 | 0 | 0 | 219 | 0 | 0 | 0 | 0.1149 | 219 | 218 | 219 | 196 |
uc.312 | p | 322 | chr10:119741124-119741445 | 217168 | CASC2 | C10orf84 | GPR10 | 276785 | 0 | 0 | 0 | 322 | 0 | 0 | 322 | 0 | 0 | 0 | 0.0364 | 322 | 321 | 322 | 269 |
uc.313 | e | 231 | chr10:121004761-121004991 | 38006 | RGS10 | TIAL1 | BAG3 | 70499 | 185 | 185 | 231 | 231 | 0 | 0 | 231 | 0 | 0 | 0 | 0.6143 | 136 | 134 | 136 | 110 |
uc.314 | n | 202 | chr10:124392535-124392736 | 34396 | ACADSB | \N | BUB3 | 61526 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0.1222 | 202 | 199 | 202 | 175 |
uc.315 | n | 235 | chr10:124392947-124393181 | 34808 | ACADSB | \N | BUB3 | 61081 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 235 | 0.1933 | 235 | 235 | 235 | 208 |
uc.316 | n | 240 | chr10:126479965-126480204 | 56497 | CTBP2 | \N | AK097855 | 8583 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | 0 | 0.0555 | 238 | 226 | 237 | 176 |
uc.317 | n | 218 | chr10:130920738-130920955 | 136812 | BC022565 | MGMT | AK021432 | 139091 | 0 | 0 | 0 | 0 | 0 | 0 | 218 | 0 | 0 | 0 | 0.1237 | 218 | 218 | 0 | 0 |
uc.318 | p | 321 | chr10:131165986-131166306 | 55039 | AL713797 | \N | BC036527 | 212366 | 65 | 0 | 65 | 70 | 0 | 0 | 0 | 0 | 0 | 321 | 0.7496 | 321 | 320 | 274 | 208 |
uc.319 | n | 316 | chr11:8269004-8269319 | 14512 | LMO1 | \N | STK33 | 108589 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 316 | 0.169 | 316 | 306 | 316 | 294 |
uc.320 | n | 335 | chr11:8282143-8282477 | 27651 | LMO1 | \N | STK33 | 95431 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 335 | 0.2704 | 335 | 318 | 304 | 207 |
uc.321 | n | 204 | chr11:15588733-15588936 | 520535 | CALCB | \N | SOX6 | 368696 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 204 | 0.2711 | 204 | 192 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.322 | n | 223 | chr11:16280660-16280882 | 1212462 | CALCB | SOX6 | AL136602 | 129166 | 0 | 0 | 0 | 0 | 0 | 0 | 223 | 0 | 0 | 0 | 0.0507 | 223 | 214 | 186 | 131 |
uc.323 | p | 200 | chr11:16439645-16439844 | 27533 | AL136602 | SOX6 | SMAP | 284658 | 0 | 0 | 0 | 24 | 0 | 0 | 200 | 0 | 0 | 0 | 0.4854 | 200 | 199 | 0 | 0 |
uc.324 | e | 225 | chr11:30521830-30522054 | 198355 | FLJ38968 | C11orf8 | FLJ46154 | 294179 | 182 | 182 | 182 | 209 | 0 | 182 | 43 | 0 | 0 | 0 | 0.7768 | 225 | 211 | 218 | 170 |
uc.325 | n | 235 | chr11:31649953-31650187 | 154474 | FLJ25059 | ELP4 | AK130563 | 19757 | 0 | 0 | 0 | 0 | 0 | 0 | 235 | 0 | 0 | 0 | 0.2633 | 235 | 219 | 0 | 0 |
uc.326 | p | 315 | chr11:31749989-31750303 | 78201 | AK130563 | ELP4 | PAX6 | 25487 | 0 | 0 | 0 | 315 | 0 | 0 | 315 | 0 | 0 | 0 | 0.287 | 315 | 314 | 0 | 0 |
uc.327 | n | 268 | chr11:31750593-31750860 | 78805 | AK130563 | ELP4 | PAX6 | 24930 | 0 | 0 | 0 | 0 | 0 | 0 | 268 | 0 | 0 | 0 | 0.0048 | 268 | 266 | 0 | 0 |
uc.328 | p | 231 | chr11:31789972-31790202 | 20335 | ELP4 | PAX6 | RCN1 | 286797 | 0 | 0 | 231 | 231 | 0 | 0 | 231 | 0 | 0 | 0 | 0.3827 | 231 | 212 | 231 | 204 |
uc.329 | n | 307 | chr11:32162301-32162607 | 70914 | RCN1 | \N | WT1 | 211025 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 307 | 0.96 | 270 | 246 | 0 | 0 |
uc.330 | e | 207 | chr11:66169256-66169462 | 20406 | CCS | RBM14 | MGC15912 | 1298 | 171 | 171 | 207 | 207 | 0 | 171 | 36 | 0 | 0 | 0 | 0.6796 | 207 | 156 | 0 | 0 |
uc.331 | e | 218 | chr11:82921467-82921684 | 25952 | FLJ37266 | DLG2 | HT007 | 2144264 | 102 | 100 | 102 | 218 | 0 | 102 | 218 | 0 | 0 | 0 | 0.0241 | 218 | 206 | 199 | 150 |
uc.332 | n | 337 | chr11:115770342-115770678 | 857448 | IGSF4 | \N | MGC13125 | 385866 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 337 | 0.0856 | 337 | 307 | 0 | 0 |
uc.333 | e | 270 | chr11:124182299-124182568 | 12460 | ESAM | FLJ23342 | AY358681 | 14223 | 270 | 270 | 270 | 270 | 202 | 68 | 270 | 0 | 0 | 0 | 0.1075 | 270 | 225 | 237 | 178 |
uc.334 | n | 222 | chr11:131405597-131405818 | 335094 | AK127362 | HNT | OPCML | 416711 | 0 | 0 | 0 | 0 | 0 | 0 | 222 | 0 | 0 | 0 | 0.0006 | 222 | 192 | 0 | 0 |
uc.335 | n | 214 | chr12:16606681-16606894 | 198071 | MGST1 | DAT1 | FLJ22655 | 1518176 | 0 | 0 | 0 | 0 | 0 | 0 | 214 | 0 | 0 | 0 | 0.0062 | 214 | 212 | 0 | 0 |
uc.336 | n | 251 | chr12:24183273-24183523 | 1185342 | AK122798 | SOX5 | FLJ32894 | 427641 | 0 | 0 | 0 | 0 | 0 | 0 | 251 | 0 | 0 | 0 | 0.7545 | 251 | 249 | 251 | 196 |
uc.337 | n | 218 | chr12:40035446-40035663 | 285111 | CNTN1 | \N | DKFZp434B0417 | 153956 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 218 | 0.0756 | 218 | 210 | 0 | 0 |
uc.338 | e | 223 | chr12:52144756-52144978 | 18067 | DKFZP564J157 | PCBP2 | MAP3K12 | 15567 | 93 | 108 | 93 | 223 | 0 | 93 | 130 | 0 | 0 | 0 | 1e-04 | 223 | 180 | 0 | 0 |
uc.339 | p | 252 | chr12:52357363-52357614 | 4664 | ATP5G2 | \N | KIAA1536 | 33555 | 0 | 0 | 0 | 213 | 0 | 0 | 0 | 252 | 0 | 0 | 0.083 | 0 | 0 | 0 | 0 |
uc.340 | n | 259 | chr12:52377099-52377357 | 24400 | ATP5G2 | \N | KIAA1536 | 13812 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 259 | 0.0707 | 0 | 0 | 0 | 0 |
uc.341 | e | 314 | chr12:52669185-52669498 | 12716 | HOXC11 | HOXC10 | HOXC9 | 10671 | 279 | 279 | 281 | 285 | 1 | 278 | 35 | 0 | 0 | 0 | 0.778 | 314 | 281 | 294 | 213 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.342 | e | 227 | chr12:52696761-52696987 | 4370 | HOXC8 | HOXC4 | SMUG1 | 163062 | 29 | 29 | 175 | 48 | 6 | 0 | 0 | 221 | 221 | 0 | 0.0908 | 227 | 132 | 0 | 0 |
uc.343 | e | 388 | chr12:52708708-52709095 | 16317 | HOXC8 | HOXC4 | SMUG1 | 150954 | 265 | 266 | 267 | 342 | 111 | 154 | 388 | 0 | 0 | 0 | 0.0553 | 0 | 0 | 369 | 246 |
uc.344 | e | 254 | chr12:52713153-52713406 | 20762 | HOXC8 | HOXC4 | SMUG1 | 146643 | 0 | 220 | 254 | 254 | 0 | 0 | 254 | 0 | 0 | 0 | 0.1277 | 0 | 0 | 254 | 150 |
uc.345 | e | 301 | chr12:52733867-52734167 | 41476 | HOXC8 | HOXC4 | SMUG1 | 125882 | 240 | 239 | 300 | 301 | 6 | 194 | 101 | 0 | 0 | 0 | 0.0788 | 205 | 134 | 301 | 257 |
uc.346 | p | 202 | chr12:105478977-105479178 | 72637 | RPC2 | \N | RFX4 | 320 | 0 | 0 | 26 | 48 | 0 | 0 | 0 | 202 | 0 | 0 | 0.0573 | 182 | 158 | 184 | 136 |
uc.347 | n | 209 | chr13:69591989-69592197 | 1111396 | KLHL1 | \N | DACH | 217901 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209 | 0.011 | 209 | 207 | 201 | 169 |
uc.348 | n | 240 | chr13:69861358-69861597 | 1380765 | KLHL1 | DACH | FLJ22624 | 1238479 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | 0 | 0 | 0 | 0.0608 | 240 | 235 | 0 | 0 |
uc.349 | p | 203 | chr13:69919303-69919505 | 1438710 | KLHL1 | DACH | FLJ22624 | 1180571 | 0 | 0 | 203 | 203 | 0 | 0 | 203 | 0 | 0 | 0 | 0.6093 | 203 | 202 | 203 | 159 |
uc.350 | n | 240 | chr13:70054101-70054340 | 1573508 | KLHL1 | DACH | FLJ22624 | 1045736 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | 0 | 0 | 0 | 0.5884 | 240 | 237 | 240 | 194 |
uc.351 | n | 255 | chr13:70466901-70467155 | 227569 | DACH | \N | FLJ22624 | 632921 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 255 | 0.0165 | 255 | 250 | 243 | 185 |
uc.352 | n | 200 | chr13:70492166-70492365 | 252834 | DACH | \N | FLJ22624 | 607711 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 200 | 0.1334 | 195 | 163 | 0 | 0 |
uc.353 | n | 323 | chr13:70569554-70569876 | 330222 | DACH | \N | FLJ22624 | 530200 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 323 | 0.4534 | 323 | 321 | 177 | 98 |
uc.354 | p | 235 | chr13:76774830-76775064 | 427164 | EDNRB | \N | POU4F1 | 196168 | 0 | 0 | 235 | 0 | 0 | 0 | 0 | 0 | 0 | 235 | 0.0033 | 235 | 227 | 156 | 122 |
uc.355 | n | 228 | chr13:93316883-93317110 | 254578 | SOX21 | \N | ABCC4 | 54528 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 228 | 0.0015 | 228 | 227 | 227 | 210 |
uc.356 | e | 251 | chr13:95706821-95707071 | 368789 | GPR80 | MBNL2 | MBNL2 | 665 | 21 | 22 | 251 | 251 | 20 | 1 | 251 | 0 | 0 | 0 | 0.8579 | 251 | 243 | 251 | 220 |
uc.357 | p | 242 | chr13:110664338-110664579 | 969742 | MGC35169 | \N | SOX1 | 5334 | 0 | 0 | 242 | 128 | 0 | 0 | 0 | 242 | 0 | 0 | 0.0027 | 242 | 237 | 163 | 110 |
uc.358 | n | 226 | chr14:24368162-24368387 | 858929 | STXBP6 | \N | NOVA1 | 536830 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 226 | 0.5384 | 226 | 217 | 0 | 0 |
uc.359 | e | 324 | chr14:24905096-24905419 | 1395863 | STXBP6 | NOVA1 | FOXG1B | 2319669 | 202 | 135 | 324 | 324 | 202 | 0 | 0 | 0 | 122 | 0 | 0.7052 | 324 | 320 | 0 | 0 |
uc.360 | e | 287 | chr14:24905510-24905796 | 1396277 | STXBP6 | NOVA1 | FOXG1B | 2319292 | 287 | 0 | 287 | 287 | 287 | 0 | 0 | 0 | 0 | 0 | 0.7694 | 287 | 282 | 0 | 0 |
uc.361 | p | 267 | chr14:27223174-27223440 | 2166352 | NOVA1 | \N | FOXG1B | 1648 | 0 | 0 | 0 | 267 | 0 | 0 | 0 | 267 | 0 | 0 | 0.4005 | 267 | 259 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.362 | p | 239 | chr14:27338791-27339029 | 86376 | BX248251 | \N | PRKCM | 696696 | 0 | 0 | 0 | 51 | 0 | 0 | 0 | 0 | 0 | 239 | 0.0176 | 239 | 237 | 0 | 0 |
uc.363 | n | 265 | chr14:27851358-27851622 | 598943 | BX248251 | \N | PRKCM | 184103 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 | 0.6571 | 265 | 263 | 0 | 0 |
uc.364 | n | 207 | chr14:28702798-28703004 | 315859 | PRKCM | \N | KIAA1333 | 315398 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 0.1513 | 207 | 184 | 0 | 0 |
uc.365 | n | 278 | chr14:28732401-28732678 | 345462 | PRKCM | \N | KIAA1333 | 285724 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 278 | 0.1125 | 278 | 273 | 0 | 0 |
uc.366 | e | 202 | chr14:29372746-29372947 | 18447 | COCH | STRN3 | AP4S1 | 111948 | 134 | 134 | 189 | 202 | 0 | 134 | 68 | 0 | 0 | 0 | 0.0258 | 189 | 170 | 162 | 94 |
uc.367 | p | 298 | chr14:31834502-31834799 | 542195 | AKAP6 | NPAS3 | EGLN3 | 548661 | 0 | 0 | 0 | 298 | 0 | 0 | 298 | 0 | 0 | 0 | 0.014 | 298 | 294 | 0 | 0 |
uc.368 | n | 228 | chr14:32058615-32058842 | 766308 | AKAP6 | NPAS3 | EGLN3 | 324618 | 0 | 0 | 0 | 0 | 0 | 0 | 228 | 0 | 0 | 0 | 0.0648 | 228 | 219 | 0 | 0 |
uc.369 | n | 213 | chr14:32112656-32112868 | 820349 | AKAP6 | NPAS3 | EGLN3 | 270592 | 0 | 0 | 0 | 0 | 0 | 0 | 213 | 0 | 0 | 0 | 0.1041 | 213 | 213 | 0 | 0 |
uc.370 | n | 393 | chr14:32192610-32193002 | 900303 | AKAP6 | NPAS3 | EGLN3 | 190458 | 0 | 0 | 0 | 0 | 0 | 0 | 393 | 0 | 0 | 0 | 0.1067 | 393 | 390 | 0 | 0 |
uc.371 | n | 296 | chr14:34010228-34010523 | 13928 | INSM2 | BC042045 | AB020691 | 124950 | 0 | 0 | 0 | 0 | 0 | 0 | 296 | 0 | 0 | 0 | 0.0573 | 296 | 288 | 96 | 50 |
uc.372 | n | 277 | chr14:34033074-34033350 | 36774 | INSM2 | BC042045 | AB020691 | 102123 | 0 | 0 | 0 | 0 | 0 | 0 | 277 | 0 | 0 | 0 | 0.4388 | 266 | 238 | 0 | 0 |
uc.373 | n | 394 | chr14:34571846-34572239 | 241933 | BRMS1L | \N | MBIP | 185570 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 394 | 0.1117 | 394 | 389 | 0 | 0 |
uc.374 | p | 224 | chr14:35705952-35706175 | 74047 | SLC25A21 | MIPOL1 | FOXA1 | 343056 | 0 | 0 | 0 | 223 | 0 | 0 | 224 | 0 | 0 | 0 | 0.8027 | 224 | 216 | 0 | 0 |
uc.375 | e | 300 | chr14:35767259-35767558 | 135354 | SLC25A21 | MIPOL1 | FOXA1 | 281673 | 34 | 34 | 34 | 34 | 0 | 34 | 266 | 0 | 0 | 0 | 0.0868 | 276 | 276 | 0 | 0 |
uc.376 | e | 290 | chr14:43555788-43556077 | 22116 | KIAA0423 | PRPF39 | FKBP3 | 19069 | 290 | 290 | 290 | 290 | 125 | 87 | 78 | 0 | 0 | 0 | 0.4904 | 290 | 279 | 0 | 0 |
uc.377 | e | 217 | chr14:43569061-43569277 | 35389 | KIAA0423 | PRPF39 | FKBP3 | 5869 | 217 | 217 | 217 | 217 | 217 | 0 | 217 | 0 | 0 | 0 | 0.1556 | 217 | 201 | 217 | 161 |
uc.378 | e | 251 | chr14:78317518-78317768 | 1107249 | BX248745 | NRXN3 | DIO2 | 336148 | 251 | 250 | 251 | 251 | 251 | 0 | 251 | 0 | 0 | 0 | 0.3072 | 251 | 250 | 251 | 221 |
uc.379 | n | 252 | chr14:95421409-95421660 | 83427 | VRK1 | \N | BX161483 | 667402 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 252 | 0.2111 | 252 | 251 | 232 | 174 |
uc.380 | n | 232 | chr14:95752635-95752866 | 414653 | VRK1 | \N | BX161483 | 336196 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 232 | 0.1127 | 232 | 232 | 232 | 176 |
uc.381 | n | 238 | chr14:95869331-95869568 | 531349 | VRK1 | \N | BX161483 | 219494 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 238 | 0.1083 | 238 | 231 | 203 | 136 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.382 | n | 200 | chr15:33634968-33635167 | 80547 | MGC14798 | \N | HH114 | 967983 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 200 | 0.0973 | 200 | 190 | 200 | 135 |
uc.383 | n | 269 | chr15:34535983-34536251 | 981562 | MGC14798 | \N | HH114 | 66899 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 269 | 0.7561 | 269 | 267 | 269 | 194 |
uc.384 | p | 266 | chr15:34681449-34681714 | 1127028 | MGC14798 | HH114 | BC028192 | 125643 | 0 | 0 | 0 | 257 | 0 | 0 | 266 | 0 | 0 | 0 | 0.1123 | 266 | 265 | 266 | 219 |
uc.385 | p | 209 | chr15:34901726-34901934 | 75009 | BC028192 | MEIS2 | MGC35118 | 1040948 | 0 | 0 | 0 | 209 | 0 | 0 | 209 | 0 | 0 | 0 | 0.1342 | 209 | 209 | 209 | 171 |
uc.386 | n | 203 | chr15:35238065-35238267 | 128504 | MEIS2 | \N | MGC35118 | 704615 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 203 | 0.0574 | 203 | 203 | 203 | 135 |
uc.387 | e | 238 | chr15:39748110-39748347 | 10600 | BC038449 | AL713737 | MGA | 8728 | 139 | 0 | 139 | 197 | 0 | 139 | 0 | 99 | 0 | 0 | 0.0774 | 238 | 182 | 0 | 0 |
uc.388 | n | 298 | chr15:55141581-55141878 | 395423 | BX641000 | TCF12 | FLJ14957 | 242880 | 0 | 0 | 0 | 0 | 0 | 0 | 298 | 0 | 0 | 0 | 0.0222 | 295 | 265 | 228 | 151 |
uc.389 | n | 271 | chr15:65381203-65381473 | 118400 | FLJ11506 | FLJ12476 | MAP2K5 | 169708 | 0 | 0 | 0 | 0 | 0 | 0 | 271 | 0 | 0 | 0 | 0.0195 | 271 | 266 | 269 | 185 |
uc.390 | e | 205 | chr15:65593988-65594192 | 84028 | FLJ12476 | MAP2K5 | AF130086 | 20215 | 41 | 101 | 41 | 102 | 0 | 41 | 164 | 0 | 0 | 0 | 0.5433 | 204 | 201 | 200 | 166 |
uc.391 | e | 311 | chr15:65756122-65756432 | 139957 | AF130086 | MAP2K5 | PIAS1 | 305957 | 27 | 48 | 27 | 101 | 0 | 27 | 284 | 0 | 0 | 0 | 0.4015 | 311 | 309 | 275 | 223 |
uc.392 | n | 256 | chr15:68107952-68108207 | 1877 | TLE3 | \N | UACA | 556883 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 256 | 0 | 0 | 0.1894 | 0 | 0 | 254 | 168 |
uc.393 | e | 275 | chr15:72630059-72630333 | 23771 | ARID3B | CLK3 | FLJ21128 | 8383 | 275 | 275 | 275 | 275 | 0 | 56 | 219 | 0 | 0 | 0 | 0.4249 | 275 | 234 | 271 | 168 |
uc.394 | n | 202 | chr15:94965868-94966069 | 328628 | AK090480 | \N | ARRDC4 | 1267646 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 202 | 0.0851 | 202 | 195 | 181 | 146 |
uc.395 | e | 249 | chr16:24545554-24545802 | 205275 | CACNG3 | RBBP6 | AK127191 | 93491 | 249 | 103 | 249 | 104 | 0 | 102 | 249 | 0 | 0 | 0 | 0.4735 | 242 | 182 | 122 | 68 |
uc.396 | n | 208 | chr16:48872692-48872899 | 450610 | AB014515 | \N | CBLN1 | 217821 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 208 | 0.0704 | 208 | 199 | 0 | 0 |
uc.397 | p | 311 | chr16:49513876-49514186 | 302538 | MGC33367 | OAZ | FLJ38101 | 322989 | 0 | 0 | 0 | 30 | 0 | 0 | 311 | 0 | 0 | 0 | 1e-04 | 311 | 304 | 182 | 138 |
uc.398 | p | 322 | chr16:49668919-49669240 | 126112 | OAZ | \N | FLJ38101 | 167935 | 0 | 0 | 54 | 158 | 0 | 0 | 0 | 0 | 0 | 322 | 0.5078 | 284 | 242 | 216 | 167 |
uc.399 | n | 214 | chr16:50627024-50627237 | 16462 | CYLD | \N | SALL1 | 321124 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 214 | 0.2473 | 214 | 208 | 201 | 141 |
uc.400 | n | 206 | chr16:51450088-51450293 | 486902 | SALL1 | \N | TNRC9 | 800221 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 206 | 0.1203 | 206 | 159 | 206 | 160 |
uc.401 | p | 250 | chr16:52273300-52273549 | 14626 | TNRC9 | \N | AK092208 | 638124 | 0 | 0 | 0 | 250 | 0 | 0 | 0 | 0 | 0 | 250 | 0.4969 | 250 | 250 | 234 | 201 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.402 | p | 245 | chr16:53432987-53433231 | 117233 | FTS | AB023222 | AB051539 | 83461 | 0 | 0 | 0 | 136 | 0 | 0 | 245 | 0 | 0 | 0 | 0.0303 | 245 | 237 | 245 | 184 |
uc.403 | p | 206 | chr16:54102457-54102662 | 3509 | IRX3 | \N | IRX5 | 641050 | 0 | 0 | 206 | 206 | 0 | 0 | 0 | 206 | 0 | 0 | 0.1696 | 206 | 199 | 206 | 197 |
uc.404 | p | 235 | chr16:55001959-55002193 | 254963 | IRX5 | \N | IRX6 | 134080 | 0 | 0 | 0 | 115 | 0 | 0 | 0 | 0 | 0 | 235 | 0.1226 | 235 | 231 | 235 | 214 |
uc.405 | n | 210 | chr16:59350792-59351001 | 432516 | AK057513 | \N | CDH8 | 2111624 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 210 | 0.3721 | 210 | 192 | 0 | 0 |
uc.406 | e | 211 | chr16:69456552-69456762 | 183762 | CYB5-M | NFAT5 | NQO1 | 62734 | 62 | 62 | 62 | 65 | 62 | 0 | 211 | 0 | 0 | 0 | 0.0061 | 206 | 193 | 211 | 146 |
uc.407 | e | 326 | chr16:69457343-69457668 | 184553 | CYB5-M | NFAT5 | NQO1 | 61828 | 326 | 300 | 326 | 326 | 0 | 326 | 0 | 0 | 0 | 0 | 0.6509 | 326 | 304 | 325 | 231 |
uc.408 | e | 252 | chr16:72597321-72597572 | 614984 | PMFBP1 | ATBF1 | AK129695 | 339240 | 252 | 120 | 252 | 252 | 18 | 234 | 0 | 0 | 0 | 0 | 0.2356 | 246 | 225 | 252 | 194 |
uc.409 | e | 244 | chr16:72869147-72869390 | 886810 | PMFBP1 | ATBF1 | AK129695 | 67422 | 244 | 0 | 244 | 142 | 244 | 0 | 0 | 0 | 0 | 0 | 0.0682 | 147 | 130 | 181 | 130 |
uc.410 | n | 219 | chr17:35207780-35207998 | 46823 | FLJ22578 | \N | LHX1 | 282614 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 219 | 0.288 | 218 | 212 | 0 | 0 |
uc.411 | n | 229 | chr17:35525169-35525397 | 29124 | LHX1 | AATF | ACACA | 112084 | 0 | 0 | 0 | 0 | 0 | 0 | 229 | 0 | 0 | 0 | 0.461 | 229 | 209 | 196 | 143 |
uc.412 | n | 268 | chr17:35532036-35532303 | 35991 | LHX1 | AATF | ACACA | 105178 | 0 | 0 | 0 | 0 | 0 | 0 | 268 | 0 | 0 | 0 | 0.0273 | 268 | 261 | 90 | 65 |
uc.413 | e | 272 | chr17:37941482-37941753 | 8642 | MGC15482 | PPARBP | CRK7 | 51223 | 272 | 272 | 272 | 272 | 0 | 272 | 272 | 0 | 0 | 0 | 0.2075 | 272 | 234 | 272 | 171 |
uc.414 | e | 246 | chr17:38624137-38624382 | 39047 | THRAP4 | THRA | CASC3 | 47207 | 246 | 246 | 246 | 246 | 162 | 84 | 216 | 0 | 0 | 0 | 0.0123 | 0 | 0 | 156 | 84 |
uc.415 | n | 207 | chr17:47138544-47138750 | 8162 | HOXB4 | \N | HOXB5 | 4507 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 207 | 207 | 0 | 0.3761 | 0 | 0 | 0 | 0 |
uc.416 | e | 286 | chr17:47145525-47145810 | 15143 | HOXB4 | HOXB5 | HOXB6 | 1994 | 286 | 216 | 286 | 286 | 128 | 158 | 0 | 0 | 0 | 0 | 0.0959 | 286 | 254 | 286 | 243 |
uc.417 | e | 222 | chr17:47156950-47157171 | 6230 | HOXB6 | BC010732 | HOXB7 | 2063 | 23 | 23 | 23 | 23 | 0 | 0 | 222 | 0 | 0 | 0 | 0.0409 | 222 | 183 | 222 | 165 |
uc.418 | e | 217 | chr17:56556866-56557082 | 10016 | AK126318 | SFRS1 | Dlc2 | 78354 | 217 | 176 | 217 | 217 | 217 | 0 | 0 | 0 | 0 | 0 | 0.0709 | 217 | 207 | 170 | 119 |
uc.419 | e | 289 | chr17:56557353-56557641 | 10503 | AK126318 | SFRS1 | Dlc2 | 77795 | 289 | 289 | 289 | 289 | 52 | 195 | 42 | 0 | 0 | 0 | 0.2795 | 289 | 259 | 289 | 195 |
uc.420 | e | 233 | chr17:63046872-63047104 | 3628 | POLG2 | DDX5 | LOC90799 | 5876 | 233 | 233 | 233 | 233 | 112 | 121 | 112 | 0 | 0 | 0 | 0.0883 | 233 | 204 | 233 | 183 |
uc.421 | n | 345 | chr18:20945142-20945486 | 633234 | HRH4 | EHZF | SS18 | 903078 | 0 | 0 | 0 | 0 | 0 | 0 | 345 | 0 | 0 | 0 | 0.3216 | 345 | 338 | 147 | 101 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.422 | p | 226 | chr18:21000175-21000400 | 688267 | HRH4 | EHZF | SS18 | 848164 | 0 | 0 | 0 | 122 | 0 | 0 | 226 | 0 | 0 | 0 | 0.3724 | 226 | 224 | 163 | 135 |
uc.423 | n | 223 | chr18:21008342-21008564 | 696434 | HRH4 | EHZF | SS18 | 840000 | 0 | 0 | 0 | 0 | 0 | 0 | 223 | 0 | 0 | 0 | 0.3804 | 223 | 223 | 159 | 143 |
uc.424 | p | 215 | chr18:21019766-21019980 | 707858 | HRH4 | EHZF | SS18 | 828584 | 0 | 0 | 0 | 134 | 0 | 0 | 215 | 0 | 0 | 0 | 0.1284 | 215 | 213 | 0 | 0 |
uc.425 | n | 325 | chr18:21117194-21117518 | 805286 | HRH4 | EHZF | SS18 | 731046 | 0 | 0 | 0 | 0 | 0 | 0 | 325 | 0 | 0 | 0 | 0.0162 | 325 | 325 | 241 | 197 |
uc.426 | p | 262 | chr18:22167579-22167840 | 142271 | MGC26605 | TAF4B | KCTD1 | 119023 | 0 | 0 | 0 | 262 | 0 | 0 | 262 | 0 | 0 | 0 | 0.0166 | 262 | 261 | 137 | 103 |
uc.427 | p | 215 | chr18:22489186-22489400 | 16890 | KCTD1 | \N | AQP4 | 198009 | 0 | 90 | 0 | 90 | 0 | 0 | 0 | 0 | 0 | 215 | 0.9488 | 153 | 98 | 181 | 112 |
uc.428 | p | 239 | chr18:28605196-28605434 | 234 | AB037805 | \N | LOC374864 | 163922 | 0 | 127 | 170 | 210 | 0 | 0 | 0 | 239 | 0 | 0 | 0.335 | 232 | 230 | 220 | 184 |
uc.429 | n | 238 | chr18:32732528-32732765 | 71600 | C18orf10 | AB037749 | BRUNOL4 | 343760 | 0 | 0 | 0 | 0 | 0 | 0 | 238 | 0 | 0 | 0 | 0.1383 | 238 | 236 | 0 | 0 |
uc.430 | n | 213 | chr18:33315637-33315849 | 253801 | AB037749 | BRUNOL4 | PIK3C3 | 4471347 | 0 | 0 | 0 | 0 | 0 | 0 | 213 | 0 | 0 | 0 | 0.025 | 213 | 199 | 117 | 82 |
uc.431 | n | 230 | chr18:33430587-33430816 | 32842 | BRUNOL4 | \N | PIK3C3 | 4356380 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 230 | 0.0083 | 230 | 218 | 0 | 0 |
uc.432 | n | 211 | chr18:33816919-33817129 | 419174 | BRUNOL4 | \N | PIK3C3 | 3970067 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 211 | 0.8471 | 211 | 207 | 0 | 0 |
uc.433 | n | 206 | chr18:34315619-34315824 | 917874 | BRUNOL4 | \N | PIK3C3 | 3471372 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 206 | 0.0009 | 206 | 196 | 0 | 0 |
uc.434 | n | 249 | chr18:43022775-43023023 | 68065 | HSPC039 | HSPC039 | AY134745 | 588695 | 0 | 0 | 0 | 0 | 0 | 0 | 249 | 0 | 0 | 0 | 0.1534 | 249 | 247 | 0 | 0 |
uc.435 | n | 227 | chr18:51238918-51239144 | 463293 | SE57-1 | TCF4 | AK127787 | 353800 | 0 | 0 | 0 | 0 | 0 | 0 | 227 | 0 | 0 | 0 | 0.0103 | 227 | 226 | 208 | 190 |
uc.436 | e | 210 | chr18:51403228-51403437 | 627603 | SE57-1 | TCF4 | AK127787 | 189507 | 92 | 92 | 99 | 134 | 20 | 72 | 118 | 0 | 0 | 0 | 0.2275 | 0 | 0 | 121 | 100 |
uc.437 | n | 215 | chr18:70484635-70484849 | 83795 | CN1 | ZNF407 | AK096231 | 457670 | 0 | 0 | 0 | 0 | 0 | 0 | 215 | 0 | 0 | 0 | 0.1319 | 215 | 214 | 215 | 171 |
uc.438 | n | 241 | chr18:70484851-70485091 | 84011 | CN1 | ZNF407 | AK096231 | 457428 | 0 | 0 | 0 | 0 | 0 | 0 | 241 | 0 | 0 | 0 | 0.3435 | 241 | 240 | 2 | 2 |
uc.439 | n | 263 | chr18:70490008-70490270 | 89168 | CN1 | ZNF407 | AK096231 | 452249 | 0 | 0 | 0 | 0 | 0 | 0 | 263 | 0 | 0 | 0 | 0.2333 | 263 | 261 | 52 | 44 |
uc.440 | n | 329 | chr18:70490342-70490670 | 89502 | CN1 | ZNF407 | AK096231 | 451849 | 0 | 0 | 0 | 0 | 0 | 0 | 329 | 0 | 0 | 0 | 0.0323 | 329 | 327 | 329 | 244 |
uc.441 | p | 248 | chr18:70695569-70695816 | 294729 | CN1 | ZNF407 | AK096231 | 246703 | 0 | 0 | 0 | 71 | 0 | 0 | 248 | 0 | 0 | 0 | 0.1752 | 248 | 246 | 185 | 149 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.442 | n | 249 | chr18:70719689-70719937 | 318849 | CN1 | ZNF407 | AK096231 | 222582 | 0 | 0 | 0 | 0 | 0 | 0 | 249 | 0 | 0 | 0 | 0.3669 | 249 | 248 | 249 | 219 |
uc.443 | e | 239 | chr19:8433269-8433507 | 23371 | LOC51257 | HNRPM | PRAM-1 | 27433 | 54 | 56 | 61 | 180 | 0 | 53 | 186 | 0 | 0 | 0 | 0.3817 | 239 | 223 | 204 | 149 |
uc.444 | n | 388 | chr19:35186619-35187006 | 103969 | AF336876 | C19orf2 | AF116658 | 24484 | 0 | 0 | 0 | 0 | 0 | 0 | 388 | 0 | 0 | 0 | 0.4415 | 388 | 388 | 388 | 327 |
uc.445 | n | 310 | chr19:35258275-35258584 | 45611 | AF116658 | \N | AB002388 | 296583 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 310 | 0.0008 | 310 | 310 | 0 | 0 |
uc.446 | p | 272 | chr19:35439694-35439965 | 227030 | AF116658 | \N | AB002388 | 115202 | 0 | 0 | 0 | 227 | 0 | 0 | 0 | 0 | 0 | 272 | 0.7456 | 272 | 263 | 0 | 0 |
uc.447 | n | 273 | chr19:35459621-35459893 | 246957 | AF116658 | \N | AB002388 | 95274 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 273 | 0.0766 | 273 | 271 | 214 | 167 |
uc.448 | n | 232 | chr19:35533370-35533601 | 320706 | AF116658 | \N | AB002388 | 21566 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 232 | 0.0973 | 232 | 232 | 232 | 201 |
uc.449 | n | 290 | chr19:35695381-35695670 | 482717 | AF116658 | AB002388 | AL137518 | 636530 | 0 | 0 | 0 | 0 | 0 | 0 | 290 | 0 | 0 | 0 | 0.3549 | 290 | 287 | 289 | 225 |
uc.450 | n | 211 | chr19:36279466-36279676 | 538660 | AB002388 | \N | AL137518 | 52524 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 211 | 0.2661 | 211 | 209 | 0 | 0 |
uc.451 | n | 225 | chr19:36498460-36498684 | 161862 | AL137518 | ZNF537 | BX640881 | 1029708 | 0 | 0 | 0 | 0 | 0 | 0 | 225 | 0 | 0 | 0 | 0.3186 | 223 | 222 | 198 | 179 |
uc.452 | e | 204 | chr19:36519787-36519990 | 183189 | AL137518 | ZNF537 | BX640881 | 1008402 | 204 | 0 | 204 | 204 | 0 | 0 | 204 | 0 | 0 | 0 | 0.459 | 204 | 196 | 204 | 159 |
uc.453 | n | 325 | chr19:47129157-47129481 | 25713 | ARHGEF1 | \N | RABAC1 | 23197 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 325 | 0.2691 | 0 | 0 | 0 | 0 |
uc.454 | e | 208 | chr20:4861440-4861647 | 62148 | RASSF2 | SLC23A1 | C20orf30 | 213837 | 89 | 175 | 90 | 176 | 0 | 89 | 119 | 0 | 0 | 0 | 0.0257 | 122 | 92 | 107 | 89 |
uc.455 | e | 245 | chr20:35043808-35044052 | 39477 | C20orf52 | RNPC2 | C20orf53 | 12079 | 73 | 245 | 245 | 245 | 73 | 0 | 245 | 0 | 0 | 0 | 0.5704 | 220 | 212 | 244 | 175 |
uc.456 | e | 320 | chr20:42773185-42773504 | 269198 | PTPRT | SFRS6 | L3MBTL | 55085 | 268 | 283 | 283 | 320 | 0 | 0 | 320 | 0 | 0 | 0 | 0.352 | 319 | 314 | 254 | 201 |
uc.457 | e | 211 | chr22:17770463-17770673 | 116711 | CLTCL1 | HIRA | MRPL40 | 23916 | 111 | 111 | 210 | 211 | 0 | 111 | 100 | 0 | 0 | 0 | 0.1111 | 210 | 157 | 137 | 106 |
uc.458 | e | 204 | chr22:34420305-34420508 | 22961 | APOL5 | RBM9 | AK130887 | 191277 | 0 | 36 | 0 | 204 | 0 | 0 | 204 | 0 | 0 | 0 | 0.6288 | 204 | 175 | 41 | 31 |
uc.459 | e | 255 | chrX:20895986-20896240 | 1249809 | RPS6KA3 | CNK2 | FLJ34960 | 138794 | 147 | 0 | 147 | 126 | 0 | 147 | 108 | 0 | 0 | 0 | 0.0154 | 255 | 245 | 202 | 128 |
uc.460 | p | 275 | chrX:24184937-24185211 | 132719 | PCYT1B | POLA | ARX | 199004 | 0 | 0 | 0 | 274 | 0 | 0 | 275 | 0 | 0 | 0 | 0.0437 | 275 | 273 | 0 | 0 |
uc.461 | n | 397 | chrX:24226223-24226619 | 174005 | PCYT1B | POLA | ARX | 157596 | 0 | 0 | 0 | 0 | 0 | 0 | 397 | 0 | 0 | 0 | 0.0082 | 397 | 391 | 0 | 0 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.462 | p | 779 | chrX:24256252-24257030 | 204034 | PCYT1B | POLA | ARX | 127185 | 0 | 0 | 778 | 0 | 0 | 0 | 779 | 0 | 0 | 0 | 0.4128 | 779 | 759 | 473 | 259 |
uc.463 | n | 275 | chrX:24277308-24277582 | 225090 | PCYT1B | POLA | ARX | 106633 | 0 | 0 | 0 | 0 | 0 | 0 | 275 | 0 | 0 | 0 | 0.0677 | 275 | 272 | 33 | 24 |
uc.464 | n | 770 | chrX:24277584-24278353 | 225366 | PCYT1B | POLA | ARX | 105862 | 0 | 0 | 0 | 0 | 0 | 0 | 770 | 0 | 0 | 0 | 0.1659 | 770 | 766 | 647 | 524 |
uc.465 | n | 310 | chrX:24278907-24279216 | 226689 | PCYT1B | POLA | ARX | 104999 | 0 | 0 | 0 | 0 | 0 | 0 | 310 | 0 | 0 | 0 | 0.0855 | 310 | 302 | 122 | 83 |
uc.466 | n | 349 | chrX:24307884-24308232 | 255666 | PCYT1B | POLA | ARX | 75983 | 0 | 0 | 0 | 0 | 0 | 0 | 349 | 0 | 0 | 0 | 0.1733 | 349 | 345 | 122 | 90 |
uc.467 | n | 731 | chrX:24369780-24370510 | 317562 | PCYT1B | POLA | ARX | 13705 | 0 | 0 | 0 | 0 | 0 | 0 | 731 | 0 | 0 | 0 | 0.0512 | 731 | 723 | 315 | 223 |
uc.468 | p | 489 | chrX:24378989-24379477 | 2462 | POLA | \N | ARX | 4738 | 0 | 0 | 0 | 260 | 0 | 0 | 0 | 0 | 489 | 0 | 0.0027 | 400 | 373 | 371 | 259 |
uc.469 | p | 222 | chrX:24379479-24379700 | 2952 | POLA | \N | ARX | 4515 | 0 | 0 | 0 | 39 | 0 | 0 | 0 | 0 | 222 | 0 | 0.0966 | 202 | 121 | 0 | 0 |
uc.470 | n | 341 | chrX:24762642-24762982 | 367361 | ARX | \N | MGC33889 | 754906 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 341 | 0.012 | 341 | 319 | 0 | 0 |
uc.471 | e | 239 | chrX:40239309-40239547 | 12379 | AK127902 | DDX3X | NYX | 98077 | 239 | 0 | 239 | 239 | 239 | 0 | 0 | 0 | 0 | 0 | 0.0955 | 239 | 230 | 239 | 156 |
uc.472 | e | 202 | chrX:40410244-40410445 | 44342 | NYX | CASK | S79449 | 155985 | 202 | 202 | 202 | 202 | 202 | 0 | 0 | 0 | 0 | 0 | 0.0496 | 202 | 191 | 0 | 0 |
uc.473 | e | 222 | chrX:69240015-69240236 | 11076 | TNRC11 | NLGN3 | GJB1 | 69630 | 81 | 47 | 81 | 90 | 0 | 60 | 162 | 0 | 0 | 0 | 0.5498 | 145 | 117 | 200 | 129 |
uc.474 | e | 210 | chrX:69335634-69335843 | 23798 | GJB1 | ZNF261 | NONO | 34500 | 151 | 151 | 174 | 210 | 0 | 151 | 59 | 0 | 0 | 0 | 0.3179 | 199 | 137 | 0 | 0 |
uc.475 | e | 397 | chrX:69632846-69633242 | 13830 | TAF1 | OGT | ACRC | 31809 | 397 | 70 | 397 | 397 | 397 | 0 | 397 | 0 | 0 | 0 | 0.0009 | 397 | 378 | 394 | 267 |
uc.476 | n | 238 | chrX:80545473-80545710 | 1235556 | SH3BGRL | \N | AK127471 | 987176 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 238 | 0.0282 | 238 | 231 | 0 | 0 |
uc.477 | e | 209 | chrX:101813348-101813556 | 72535 | MGC39655 | PLP1 | MGC39900 | 175505 | 165 | 209 | 165 | 209 | 0 | 165 | 209 | 0 | 0 | 0 | 0.882 | 209 | 165 | 191 | 113 |
uc.478 | e | 252 | chrX:121297212-121297463 | 2415524 | GLUD2 | GRIA3 | THOC2 | 145063 | 115 | 0 | 119 | 252 | 0 | 115 | 252 | 0 | 0 | 0 | 0.4191 | 252 | 239 | 243 | 222 |
uc.479 | e | 302 | chrX:121311506-121311807 | 2429818 | GLUD2 | GRIA3 | THOC2 | 130719 | 115 | 0 | 116 | 302 | 0 | 115 | 302 | 0 | 0 | 0 | 0.0034 | 302 | 277 | 302 | 255 |
uc.480 | e | 202 | chrX:121933027-121933228 | 193364 | BIRC4 | STAG2 | SH2D1A | 244720 | 202 | 0 | 202 | 202 | 202 | 0 | 0 | 0 | 0 | 0 | 0.355 | 123 | 122 | 123 | 69 |
uc.481 | e | 204 | chrX:121933230-121933433 | 193567 | BIRC4 | STAG2 | SH2D1A | 244515 | 204 | 0 | 204 | 204 | 204 | 0 | 0 | 0 | 0 | 0 | 0.4925 | 204 | 197 | 204 | 120 |
ultra conserved element | upstream gene | within | downstream gene | Human | Any Species | Known Gene Overlap | RNAfold | chicken | Fugu | ||||||||||||||
name | type | length | Build 34 (hg16) coords | distance | name | gene | name | distance | mRNA | spliced EST | mRNA | EST | UTR | CDS | intron | 10k upstr | 10k down | intergenic | p-value | overlap | identical | overlap | identical |
uc.482 | n | 295 | chrX:137876095-137876389 | 291047 | ATP11C | \N | SOX3 | 415788 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 295 | 0.1879 | 228 | 195 | 285 | 208 |