I am a graduate student in the Bioinformatics/Biomolecular engineering department at UC Santa Cruz

Important pages

Useful tools and databases

rfamRNA covariance models
infernalRNA alignment and secondary structure
Archaeal Genome browserTool for browsing archaeal and some bacterial genomes
Sequencing read archivedatabase of short read data
gtRNAdbgenomic tRNA database
tRNAscan-SEfinding tRNAs in genome
lastzWhole genome alignment

Tracks I created on the archaeal genome browser

I created the tracks shown here in this Archaeal Genome browser screenshot including the Conserved domains track, the megablast track, the gene prediction track and GEO microarray tracks as well as adding tooltips and an auto-set width button.