| Summary of different words found in the fields of the
*.gff files from Sanger, Feb 2003 With a count of how many times the word was found | |||||
|---|---|---|---|---|---|
| 2nd field 45 different words found "Source" | 3rd field 67 different words found "Feature" | 9th field, first word 19 different words found "Attribute" | |||
| "" | 2441518 | "similarity" | 4675061 | "Target" | 4712848 |
| "wublastx" | 1535655 | "HOMOL_GAP" | 2369975 | "Sequence" | 415487 |
| "BLATX_NEMATODE" | 820422 | "repeat" | 166584 | "Note" | 149021 |
| "waba_weak" | 734467 | "exon" | 137776 | "PCR_product" | 27281 |
| "BLAT_EST_BEST" | 561143 | "CDS" | 135780 | "Homol_data" | 26819 |
| "curated" | 407317 | "intron" | 117813 | "RNAi" | 22570 |
| "waba_strong" | 321334 | "structural" | 26842 | "Microarray_aff" | 18454 |
| "BLAT_EST_OTHER" | 303997 | "Homol_data" | 26819 | "Expr_profile" | 17360 |
| "waba_coding" | 284716 | "experimental" | 25225 | "UTR" | 16795 |
| "inverted" | 83592 | "Sequence" | 25127 | "Allele" | 15374 |
| "hmmfs.3" | 62275 | "Microarray_aff" | 18454 | "Clone" | 7715 |
| "tandem" | 54068 | "Expression" | 17360 | "Feature_data" | 3042 |
| "RepeatMasker" | 28347 | "UTR" | 16795 | "Confirmed_by_EST" | 2557 |
| "GenePair_STS" | 26842 | "transcription" | 10354 | "Transcript" | 1837 |
| "BLAT_EMBL_OTHER" | 26819 | "ALLELE" | 7687 | "Operon" | 876 |
| "RNAi" | 22570 | "SNP" | 5921 | "Confirmed_by_cDNA" | 104 |
| "Expr_profile" | 17360 | "Clone_left_end" | 4358 | "Transposon" | 95 |
| "UTR" | 16795 | "OLIGO" | 4298 | "Confirmed_in_UTR" | 76 |
| "BLAT_mRNA_BEST" | 13454 | "Clone" | 3472 | "Confirmed_as_FALSE" | 12 |
| "assembly_tag" | 10473 | "Clone_right_end" | 3357 | - | |
| "BLASTN_TC1" | 9440 | "Feature_data" | 3042 | - | |
| "Allele" | 7687 | "annotation" | 2830 | - | |
| "BLAT_mRNA_OTHER" | 6087 | "Finished" | 2516 | - | |
| "Genomic_canonical" | 3266 | "Allele" | 1536 | - | |
| "cDNA_for_RNAi" | 2655 | "trans-splice_acceptor" | 1278 | - | |
| "hmmfs" | 2270 | "Transcript" | 888 | - | |
| "Pseudogene" | 2092 | "PCR_product" | 439 | - | |
| "tRNAscan-SE-1.11" | 1538 | "oligo" | 268 | - | |
| "scan" | 1380 | "Knockout_allele" | 230 | - | |
| "BLAT_EMBL_BEST" | 1042 | "comment" | 214 | - | |
| "SL1" | 988 | "compression" | 196 | - | |
| "operon" | 876 | "repeat_region" | 195 | - | |
| "SL2" | 290 | "cosmid" | 138 | - | |
| "RNA" | 156 | "ambiguous" | 90 | - | |
| "snRNA" | 116 | "miscellaneous" | 75 | - | |
| "Transposon" | 100 | "misc_feature" | 47 | - | |
| "miRNA" | 76 | "LTR" | 42 | - | |
| "possible_error" | 64 | "Conflict" | 38 | - | |
| "mRNA" | 30 | "Inverted" | 35 | - | |
| "hand_built" | 24 | "Comment" | 25 | - | |
| "Link" | 24 | "Direct" | 24 | - | |
| "rRNA" | 12 | "stop" | 21 | - | |
| "misc_feature" | 11 | "" | 18 | - | |
| "possible_exon" | 8 | "ignore" | 17 | - | |
| "TSL_site" | 5 | "Alu" | 15 | - | |
| - | "Polymorphism" | 14 | - | ||
| - | "repeat_unit" | 12 | - | ||
| - | "TeamLeader" | 11 | - | ||
| - | "Stolen" | 9 | - | ||
| - | "CpG" | 9 | - | ||
| - | "resolved" | 9 | - | ||
| - | "Warning" | 9 | - | ||
| - | "Finisher" | 8 | - | ||
| - | "polyA_site" | 8 | - | ||
| - | "misc_signal" | 7 | - | ||
| - | "DSTM" | 7 | - | ||
| - | "unknown" | 6 | - | ||
| - | "Consensus" | 6 | - | ||
| - | "final" | 3 | - | ||
| - | "Operon" | 1 | - | ||
| - | "Masked" | 1 | - | ||
| - | "sequencing" | 1 | - | ||
| - | "Clooe" | 1 | - | ||
| - | "polymorphism" | 1 | - | ||
| - | "Possible_frameshift" | 1 | - | ||
| - | "polyA_signal" | 1 | - | ||
| - | "misc_structure" | 1 | - | ||