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To be done: Working on histogram displays of each measurement

From Mouse refGene.txt file:
ftp://genome.ucsc.edu/goldenPath/mmFeb2002/database/refGene.txt.gz 
 -r--r--r-- 1 ftp ftp 744578 Apr 20 2002 refGene.txt.gz

Summary of RefSeq file: mmRefGene.txt
8555 gene count
4310 + strand genes
4245 - strand genes
N itemsMaximumMinimumRangeMeanStdDevMeasurement
8555 2258433 66 2258367 37720 93634 Overall Gene Length
8555 117 1 116 9 8 Exons in Gene
8555 21946 66 21880 2008 1449 Sum of Exons Length in Gene
8555 11880 6 11874 530 6571st Exon Length
8555 11493 6 11487 529 652Last Exon Length
8555 116 0 116 8 8 Introns in Gene
7828 2244623 6 2244617 39027 96689 Sum of Introns Length in Gene
7828 729403 6 729397 6849 225891st Intron Length
7828 729403 6 729397 6188 21305Last Intron Length

From Human refGene.txt file:
ftp://genome.ucsc.edu/goldenPath/14nov2002/database/refGene.txt.gz 
 -r--r--r-- 1 ftp ftp 1663702 Dec 20 21:40 refGene.txt.gz

Summary of RefSeq file: hsRefGene.txt
18214 gene count
9115 + strand genes
9099 - strand genes
N itemsMaximumMinimumRangeMeanStdDevMeasurement
18214 2220382 105 2220277 51755 107296 Overall Gene Length
18214 313 1 312 10 9 Exons in Gene
18214 104296 105 104191 2511 2129 Sum of Exons Length in Gene
18214 12793 6 12787 698 8491st Exon Length
18214 12793 6 12787 690 833Last Exon Length
18214 312 0 312 9 9 Introns in Gene
16888 2206313 6 2206307 53110 109826 Sum of Introns Length in Gene
16888 955100 6 955094 8603 263151st Intron Length
16888 1044114 6 1044108 8766 28973Last Intron Length

From Intronerator introns.gff file: 
 -rw-r--r-- 1 ftp ftp 1463041 Oct 16 09:17 introns.gff

Summary of RefSeq file: ceRef.txt
7468 gene count
3781 + strand genes
3687 - strand genes
N itemsMaximumMinimumRange MeanStdDevMeasurement
7468 894952 286 894666 2445 10673Overall Gene Length
7468 59 2 57 4 2Exons in Gene
7468 894591 255 894336 1388 10448Sum of Exons Length in Gene
7468 127 127 0 127 01st Exon Length
7468 128 128 0 128 0Last Exon Length
7468 58 1 57 3 2Introns in Gene
7468 24283 31 24252 1056 1865Sum of Introns Length in Gene
7468 19928 31 19897 378 9321st Intron Length
7468 20090 31 20059 376 937Last Intron Length
This page last updated: Tuesday, 30-Mar-2010 12:06:21 PDT.