The current draft of the Vibrio cholerae O395 genome is 4.15 Million bp long.

The most recent genome sequence draft was released 09/17/2005 by the TIGR, but there is no associated genome publication to date.

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
VchoO_01_1302474147.782576NZ_AAKG01000001
VchoO_01_2110884946.89921NZ_AAKG01000002
VchoO_01_3550645.264NZ_AAKG01000003
VchoO_01_4517151.400NZ_AAKG01000004
VchoO_01_5209243.162NZ_AAKG01000005
VchoO_01_6135941.131NZ_AAKG01000006
VchoO_01_796250.731NZ_AAKG01000007

The following list shows examples of valid position queries for this genome: 

Request:Genome Browser Response:
VchoO_01_1Displays the entire sequence "VchoO_01_1" in the browser window
VchoO_01_1:1-10000Displays first ten thousand bases of the sequence "VchoO_01_1"
transporter    Lists all genes with "transporter" in the name or description
VchoO_01000010Display genome at position of gene VchoO_01000010


Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us obtain funding to continue development of this community resource.