The current draft of the Ferroplasma acidarmanus Fer1 genome is 1.87 Million bp long.

The most recent genome sequence draft was released - by the DOE Joint Genome Institute, but there is no associated genome publication to date.

Sample position queries

A genome position can be specified by chromosomal coordinate range, COG ID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
ctg90204430.380NZ_AABC04000061
ctg109212231.342NZ_AABC04000060
ctg112215732.550NZ_AABC04000059
ctg116240431.412NZ_AABC04000058
ctg102247428.250NZ_AABC04000057
ctg45256744.570NZ_AABC04000056
ctg114258031.982NZ_AABC04000055
ctg111274632.272NZ_AABC04000054
ctg115279638.452NZ_AABC04000053
ctg103282429.920NZ_AABC04000052
ctg106285532.190NZ_AABC04000051
ctg107287930.642NZ_AABC04000050
ctg117363133.962NZ_AABC04000049
ctg121412136.354NZ_AABC04000048
ctg125444631.695NZ_AABC04000047
ctg118452034.823NZ_AABC04000046
ctg123453235.226NZ_AABC04000045
ctg119455135.844NZ_AABC04000044
ctg124538734.013NZ_AABC04000043
ctg120567731.626NZ_AABC04000042
ctg126569935.837NZ_AABC04000041
ctg132608335.137NZ_AABC04000040
ctg134624435.496NZ_AABC04000039
ctg130734035.465NZ_AABC04000038
ctg133811736.017NZ_AABC04000037
ctg129871930.817NZ_AABC04000036
ctg128939233.078NZ_AABC04000035
ctg135956834.025NZ_AABC04000034
ctg140983835.399NZ_AABC04000033
ctg137996535.357NZ_AABC04000032
ctg1391137437.1010NZ_AABC04000031
ctg1381265036.378NZ_AABC04000030
ctg1361292735.089NZ_AABC04000029
ctg1421319235.346NZ_AABC04000028
ctg1411323836.7511NZ_AABC04000027
ctg1441479334.4411NZ_AABC04000026
ctg1481605937.9513NZ_AABC04000025
ctg1431854435.4916NZ_AABC04000024
ctg1451876535.598NZ_AABC04000023
ctg1461940835.6611NZ_AABC04000022
ctg1472142536.9320NZ_AABC04000021
ctg1492435636.6624NZ_AABC04000020
ctg1503192736.3231NZ_AABC04000019
ctg1513236237.3830NZ_AABC04000018
ctg1554883937.2737NZ_AABC04000017
ctg1525282937.7647NZ_AABC04000016
ctg1565743337.2258NZ_AABC04000015
ctg1595793437.3953NZ_AABC04000014
ctg1576405936.7955NZ_AABC04000013
ctg1606510737.3357NZ_AABC04000012
ctg1586757136.8575NZ_AABC04000011
ctg1546943335.4363NZ_AABC04000010
ctg1617309537.5761NZ_AABC04000009
ctg1627600737.6076NZ_AABC04000008
ctg1637976038.5081NZ_AABC04000007
ctg1658358737.2584NZ_AABC04000006
ctg1649047136.8777NZ_AABC04000005
ctg16612787236.87136NZ_AABC04000004
ctg16713610836.99123NZ_AABC04000003
ctg16814564036.59144NZ_AABC04000002
ctg16916039537.34147NZ_AABC04000001

The following list shows examples of valid position queries for this genome: 

Request:Genome Browser Response:
ctg169Displays the entire sequence "ctg169" in the browser window
ctg169:1-10000Displays first ten thousand bases of the sequence "ctg169"
transporter    Lists all genes with "transporter" in the name or description
FaciDRAFT_0009Display genome at position of gene FaciDRAFT_0009


Credits

The Archaeal Genome Browsers at UCSC were developed by members of the Lowe Lab (Kevin Schneider, Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

If you use the browser for your research and wish to cite it, a paper describing the work has been accepted to the 2006 Nucleic Acids Research Database Issue (KL Schneider, KS Pollard, R Baertsch, A Pohl, TM Lowe). Citations will help us obtain funding to continue development of this community resource.