This track displays blastz alignments of the $o_organism assembly ($o_db, $o_date) to the $organism genome.
This track follows the display conventions for PSL alignment tracks. Each item in the display is identified by the chromosome, strand, and location of the match (in thousands).
The track description page offers the following filter and configuration options:
When you have finished configuring the filter, click the Submit button to return to the annotation tracks page.
The best-in-genome filtering was done using UCSC's axtBest program.
Chiaromonte, F., Yap, V.B., Miller, W. Scoring pairwise genomic sequence alignments. Pac Symp Biocomput 2002, 115-26 (2002).
Schwartz, S., Kent, W.J., Smit, A., Zhang, Z., Baertsch, R., Hardison, R., Haussler, D., and Miller, W. Human-mouse alignments with BLASTZ. Genome Res. 13(1), 103-107 (2003).