Index of /~karplus/undertaker

	Name	Last modified	Size	Description
	Parent Directory		-
	.#README.1.2	10-Mar-2009 04:42	41K
	Align.cc	02-Jan-2007 14:42	6.4K
	Align.h	04-Sep-2006 16:10	709
	AlignedFragments.cc	21-Sep-2008 12:35	84K
	AlignedFragments.h	09-Feb-2005 19:01	21K
	AlignmentsContactsCommands.cc	10-Mar-2009 04:37	18K
	AngleHistByResidue.cc	11-Apr-2009 15:43	1.7K
	AngleHistByResidue.h	11-Apr-2009 15:43	2.7K
	AngleHistCommands.cc	11-Apr-2009 15:43	5.9K
	AngleHistCostFcn.cc	11-Apr-2009 15:43	4.3K
	AngleHistCostFcn.h	11-Apr-2009 15:43	2.4K
	AnglePredCostFcn.cc	11-Apr-2009 15:43	25K
	AnglePredCostFcn.h	11-Apr-2009 15:43	5.2K
	AngleVectorAlphabet.cc	11-Apr-2009 15:43	21K
	AngleVectorAlphabet.h	11-Apr-2009 15:43	5.0K
	AngleVectorPredCostFcn.cc	11-Apr-2009 15:43	5.9K
	AngleVectorPredCostFcn.h	11-Apr-2009 15:43	1.9K
	AtomType.cc	09-Dec-2002 12:15	4.7K
	AtomType.h	27-Feb-2004 05:22	2.9K
	BandAlign.cc	04-Sep-2006 16:13	7.3K
	BandAlign.h	04-Sep-2006 16:13	1.7K
	BondCostFcns.cc	11-Apr-2009 15:43	7.3K
	Bonds.cc	11-Jan-2004 14:47	2.9K
	Bonds.h	09-Dec-2002 12:15	188
	BreakCostFcn.cc	10-Mar-2009 04:37	11K
	BreakCostFcn.h	09-Feb-2005 19:01	1.1K
	BreakMethods.cc	21-Sep-2008 12:35	38K
	BurialCostFcn.cc	11-Apr-2009 15:43	16K
	BurialCostFcn.h	11-Apr-2009 15:43	6.2K
	BurialPredCostFcn.cc	24-Mar-2008 23:11	12K
	BurialPredCostFcn.h	12-Sep-2007 16:57	2.7K
	Bystroff.cc	11-Apr-2009 15:43	17K
	Bystroff.h	11-Apr-2009 15:43	8.6K
	CVS/	11-Apr-2009 15:43	-
	ChainsResiduesAndAtoms.cc	11-Apr-2009 15:43	90K
	ChainsResiduesAndAtoms.h	11-Apr-2009 15:43	42K
	CheatingCostFcns.cc	11-Apr-2009 15:43	30K
	Clash.cc	11-Apr-2009 15:43	21K
	Clash.h	11-Apr-2009 15:43	6.8K
	ClashCommands.cc	11-Apr-2009 15:43	22K
	ClashCostFcns.cc	02-Jul-2008 13:30	5.6K
	ClashTable.cc	11-Apr-2009 15:43	38K
	ClashTable.h	02-Jul-2008 13:30	11K
	CombinedNNet.cc	22-Jan-2008 06:38	19K
	CombinedNNet.h	22-Jan-2008 06:38	6.0K
	ConformCommands.cc	04-Sep-2006 16:10	17K
	Conformation.cc	11-Apr-2009 15:43	25K
	Conformation.h	11-Apr-2009 15:43	18K
	ConformationPool.cc	26-Jul-2005 17:31	7.1K
	ConformationPool.h	01-Sep-2004 15:18	3.8K
	Constraint.cc	11-Apr-2009 15:43	4.3K
	Constraint.h	11-Apr-2009 15:43	9.6K
	ConstraintCostFcn.cc	11-Apr-2009 15:43	60K
	ConstraintSet.cc	31-May-2008 20:19	9.9K
	ConstraintSet.h	31-May-2008 20:19	7.3K
	ContactCostFcn.cc	13-Dec-2007 05:59	3.2K
	ContactGivenSep.cc	22-Jan-2008 06:39	2.6K
	ContactGivenSep.h	22-Jan-2008 06:39	504
	CostFcn.cc	11-Apr-2009 15:43	1.7K
	CostFcn.h	11-Apr-2009 15:43	12K
	CostFcnCommands.cc	02-Jul-2008 13:30	21K
	Disulphide.cc	24-Mar-2008 23:53	13K
	DisulphideCostFcns.cc	22-Apr-2008 17:28	19K
	DisulphideCostFcns.h	24-Mar-2008 23:11	824
	Edge.cc	25-Jan-2004 22:38	872
	Edge.h	27-Feb-2004 03:03	1.3K
	EdgeSet.cc	25-Jan-2004 22:38	1.8K
	EdgeSet.h	25-Jan-2004 22:38	2.3K
	FilenameCommands.cc	10-Jan-2004 14:52	2.4K
	FragmentLibrary.cc	11-Apr-2009 15:43	18K
	FragmentLibrary.h	11-Apr-2009 15:43	12K
	GDT.cc	10-Mar-2009 04:37	17K
	GDT.h	02-Jan-2007 14:42	2.6K
	GeneralCommands.cc	20-Apr-2007 10:06	3.6K
	GeneticMethod.cc	21-Aug-2004 14:36	5.0K
	GeneticMethod.h	31-May-2008 20:19	5.0K
	Globals.cc	02-Jul-2008 13:30	12K
	Globals.h	02-Jul-2008 13:30	10K
	HbondAlphabets.cc	11-Apr-2009 15:38	74K
	HbondCommands.cc	11-Apr-2009 15:43	33K
	HbondCostFcns.cc	11-Apr-2009 15:43	26K
	HbondCostFcns.h	11-Apr-2009 15:43	6.0K
	HbondPredCostFcn.cc	11-Apr-2009 15:43	5.9K
	HbondPredCostFcn.h	11-Apr-2009 15:43	2.9K
	HealPeptide.cc	09-Feb-2005 19:02	2.0K
	HistByResidue.cc	29-Mar-2006 14:02	8.4K
	HistByResidue.h	29-Mar-2006 14:02	2.6K
	KnotCostFcn.cc	11-Apr-2009 15:43	6.8K
	LocalDensity.cc	09-Nov-2007 22:41	6.4K
	LocalStructureComputation.cc	08-Apr-2009 22:38	2.3K
	LocalStructureComputation.h	08-Apr-2009 22:38	4.2K
	Makefile	11-Apr-2009 15:43	685K
	MaxOnLine.cc	10-Jan-2004 22:41	3.1K
	MaxOnLine.h	10-Jan-2004 22:41	796
	Multimer.cc	02-Jul-2008 13:30	15K
	Multimer.h	09-Feb-2005 19:01	4.2K
	OptCommands.cc	02-Jul-2008 13:30	42K
	OptimizeConstraints.cc	26-Feb-2008 14:53	15K
	OptimizeConstraints.h	03-Feb-2008 10:05	2.0K
	PDBInput.cc	12-Sep-2007 16:57	3.9K
	PDBInput.h	11-Jan-2004 14:47	457
	Patch.cc	31-May-2008 20:19	21K
	Patch.h	20-Apr-2007 10:06	2.0K
	PatchBackbone.cc	11-Apr-2009 15:43	15K
	PatchBackbone.h	11-Apr-2009 15:43	1.0K
	PrintCommands.cc	11-Apr-2009 15:43	120K
	QCostFcn.cc	02-Apr-2009 10:46	4.7K
	QCostFcn.h	02-Apr-2009 10:46	847
	README	11-Apr-2009 15:43	41K
	README~	31-May-2008 20:19	40K
	RadiusCostFcn.cc	11-Apr-2009 15:43	7.7K
	ReadAlphabet.cc	23-Jan-2008 17:08	2.7K
	ReadPDBCommands.cc	31-May-2008 20:19	33K
	ResidueFeature.cc	11-Apr-2009 15:43	41K
	ResidueFeature.h	11-Apr-2009 15:43	4.6K
	RingStacking.cc	03-Aug-2007 14:17	26K
	Rotamer.cc	03-May-2008 09:31	32K
	Rotamer.h	03-May-2008 09:31	12K
	RotamerCommands.cc	10-Jan-2004 14:52	2.6K
	RotamerMethods.cc	11-Apr-2009 15:43	15K
	ScwrlCommands.cc	21-Sep-2008 12:35	12K
	ScwrlCommands.h	05-May-2008 10:50	705
	Segment.cc	22-Oct-2004 05:51	3.9K
	Segment.h	31-May-2008 20:19	4.6K
	SegmentList.cc	27-Feb-2004 02:50	2.5K
	SegmentList.h	10-Jan-2004 14:52	1.9K
	SidechainCostFcns.cc	03-May-2008 09:31	1.9K
	SpecificFragmentCommands.cc	11-Apr-2009 15:43	53K
	SpecificFragmentLibrary.cc	20-Apr-2007 10:06	18K
	SpecificFragmentLibrary.h	20-Apr-2007 10:06	11K
	Spot.cc	11-Apr-2009 15:43	18K
	Spot.h	09-Nov-2007 22:41	9.4K
	SpotCommands.cc	09-Nov-2007 22:41	59K
	SpotOperations.cc	26-Jul-2005 17:31	8.8K
	SpotOperations.h	09-Dec-2002 12:16	2.0K
	TrainingCommands.cc	10-Jan-2004 14:52	4.0K
	TweakMethods.cc	11-Apr-2009 15:43	58K
	XYZInterpolate.h	10-Jan-2004 14:52	716
	XYZRandom.h	08-Oct-2004 13:18	2.5K
	clash.ko	10-Jan-2004 14:49	53K
	clash1.ko	10-Jan-2004 14:49	61K
	config.local.mk	09-Dec-2002 12:15	7.2K
	gen_norm.cc	09-Apr-2004 14:09	2.0K
	gen_norm.h	10-Jan-2004 22:41	1.2K
	undertaker.cc	10-Mar-2009 04:37	2.9K