make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763  collect-mult250-data
make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'
../run-scripts/collect-data250 -txxalign str2uc-near-backbone-11-20 -dataset dunbrack-30pc-1763 -arch Gstr2uc_near_backbone_11_20-5-20-5-20-5 -alphaname aa -data tr12 < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr12-aa-mult150.nets > quality-reports/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr12-mult250-aa.rdb
../run-scripts/collect-data250 -txxalign str2uc-near-backbone-11-20 -dataset dunbrack-30pc-1763 -arch Gstr2uc_near_backbone_11_20-5-20-5-20-5 -alphaname aa -data tr23 < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr23-aa-mult150.nets > quality-reports/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr23-mult250-aa.rdb
../run-scripts/collect-data250 -txxalign str2uc-near-backbone-11-20 -dataset dunbrack-30pc-1763 -arch Gstr2uc_near_backbone_11_20-5-20-5-20-5 -alphaname aa -data tr31 < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr31-aa-mult150.nets > quality-reports/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr31-mult250-aa.rdb
make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'
make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763  trAB-test.scripts
make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'
/projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr12.scripts' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr12-aa-mult250.nets
make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003'
cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-TEST-from-empty.template.script \
	| sed -e "s/ALPHANAME/aa/"  \
	| sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/"  \
	| sed -e "s/PARAMFILE/7-jul-05.params/"  \
	| sed -e "s/DATASET/dunbrack-30pc-1763/"  \
	| sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/"  \
	| sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-20-5-20-5/"  \
	| sed -e "s/NETNUM/net003/" \
	> run-scripts/tmp.THIRDStrAB.script
cat run-scripts/tmp.THIRDStrAB.script \
	| sed -e "s/THIRDSNAME/tr12/"  \
	| sed -e "s/THIRDSA/1/"  \
	| sed -e "s/THIRDSB/2/"  \
	| sed -e "s/THIRDSC/3/"  \
	> run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr12-aa-test-from-empty.script
rm -f run-scripts/tmp.THIRDStrAB.script
make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003'
/projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr23.scripts' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr23-aa-mult250.nets
make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027'
cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-TEST-from-empty.template.script \
	| sed -e "s/ALPHANAME/aa/"  \
	| sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/"  \
	| sed -e "s/PARAMFILE/7-jul-05.params/"  \
	| sed -e "s/DATASET/dunbrack-30pc-1763/"  \
	| sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/"  \
	| sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-20-5-20-5/"  \
	| sed -e "s/NETNUM/net027/" \
	> run-scripts/tmp.THIRDStrAB.script
cat run-scripts/tmp.THIRDStrAB.script \
	| sed -e "s/THIRDSNAME/tr23/"  \
	| sed -e "s/THIRDSA/2/"  \
	| sed -e "s/THIRDSB/3/"  \
	| sed -e "s/THIRDSC/1/"  \
	> run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr23-aa-test-from-empty.script
rm -f run-scripts/tmp.THIRDStrAB.script
make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027'
/projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr31.scripts' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr31-aa-mult250.nets
make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042'
cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-TEST-from-empty.template.script \
	| sed -e "s/ALPHANAME/aa/"  \
	| sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/"  \
	| sed -e "s/PARAMFILE/7-jul-05.params/"  \
	| sed -e "s/DATASET/dunbrack-30pc-1763/"  \
	| sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/"  \
	| sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-20-5-20-5/"  \
	| sed -e "s/NETNUM/net042/" \
	> run-scripts/tmp.THIRDStrAB.script
cat run-scripts/tmp.THIRDStrAB.script \
	| sed -e "s/THIRDSNAME/tr31/"  \
	| sed -e "s/THIRDSA/3/"  \
	| sed -e "s/THIRDSB/1/"  \
	| sed -e "s/THIRDSC/2/"  \
	> run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr31-aa-test-from-empty.script
rm -f run-scripts/tmp.THIRDStrAB.script
make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042'
make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'
make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763  trAB-test.run
make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'
/projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr12.run' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr12-aa-mult250.nets
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-28133-8313477/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr23.run' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr23-aa-mult250.nets
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-28154-13690392/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev  ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-20-5-20-5 DATASET=dunbrack-30pc-1763 test-tr31.run' < networks/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-20-5-20-5-tr31-aa-mult250.nets
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-28171-9395930/README for more info.
make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'