# read in both the alphabet and the background probabilities:
ReadAlphabet DSSP.alphabet




ReadNeuralNet t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net
SetOverhang
ReadParams 7-jul-05.params


# Note: the following includes read the training set(s),
# and, in doing so, may reset the InFilePrefix

ReadToSet test
InFilePrefix 
Include tiny-test.dssp.t2k-thin90-dssp

ReportNetQualityForTestTo t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.test
ReportQvsPhatTo t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.q_vs_phat
ReportTestByChain t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.by-chain
ReportUnitUsageTo t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.unit-usage

TestNet

ReportTestByChain
ReportQvsPhatTo 
ReportUnitUsageTo