ConstraintSet constraints // put any additional constraints here, such as helix constraints, strand constraints, // sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms. # This cost function is hand-tweaked starting from MQA_highE.costfcn # to increase weights for breaks, soft_clashes, and hbond_geom_backbone. # (deep_knot removed to reduce cost of optimization) # This is almost certainly *NOT* the right function to be optimizing. SetCost ehl2_constraints 0.795226 \ pred_alpha_back 12.3342 \ CBContact 1.35358 \ nn1000 15.9591 \ pred_cb14_back 7.98801 \ pred_nb11_back 6.11382 \ noncontact_bonus 0.469626 \ rejected_bonus 31.5481 \ bystroff 4.00966 \ sidechain 0.1 \ align_bonus 7.65459 \ maybe_metal 2.01559 \ break 20 \ soft_clashes 20 \ hbond_geom_backbone 10 // Probably should add maybe_ssbond if