# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.50e-19 1vi0A 206 1.19e-18 a.4.1.9,a.121.1.1 100720,100721 3ccyA 203 1.40e-18 3bhqA 211 1.49e-18 2iekA 200 1.90e-18 2ibdA 204 1.99e-18 2f07A 197 2.25e-18 1qvtA 194 2.87e-18 a.4.1.9,a.121.1.1 104602,104603 2id6A 202 3.46e-18 3bcgA 215 3.52e-18 2qtqA 213 4.91e-18 3crjA 199 5.41e-18 1rktA 205 5.52e-18 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 5.53e-18 2uxuA 210 5.81e-18 2dg7A 195 6.43e-18 1pb6A 212 7.19e-18 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 8.16e-18 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 8.48e-18 1jt6A 188 8.75e-18 a.4.1.9,a.121.1.1 67247,67248 2genA 197 9.16e-18 a.4.1.9,a.121.1.1 135062,135063 2rasA 212 1.16e-17 3c2bA 221 1.30e-17 3cdlA 203 1.48e-17 2fq4A 192 1.66e-17 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 1.67e-17 a.4.1.9,a.121.1.1 125194,125195 2zb9A 214 1.77e-17 3colA 196 1.98e-17 2hytA 197 2.22e-17 3b81A 203 2.27e-17 1z77A 200 2.89e-17 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 3.37e-17 2iaiA 230 3.53e-17 2zcmA 192 3.61e-17 2of7A 260 5.09e-17 2qcoA 210 6.06e-17 1t56A 216 6.10e-17 a.4.1.9,a.121.1.1 106428,106429 3cjdA 198 6.85e-17 2vkeA 208 7.93e-17 3cwrA 208 8.23e-17 2id3A 225 8.26e-17 a.4.1.9,a.121.1.1 137261,137262 2q24A 194 9.25e-17 2qibA 231 1.29e-16 2jj7A 186 1.29e-16 2o7tA 199 1.38e-16 1ui5A 215 1.39e-16 a.4.1.9,a.121.1.1 107856,107857 1zk8A 183 1.43e-16 a.4.1.9,a.121.1.1 125177,125178 2iu5A 195 1.51e-16 1sgmA 191 1.57e-16 a.4.1.9,a.121.1.1 105537,105538 2vprA 207 1.84e-16 2nx4A 194 2.46e-16 2fx0A 201 2.72e-16 a.4.1.9,a.121.1.1 134269,134270 2d6yA 202 2.83e-16 a.4.1.9,a.121.1.1 131313,131314 2i10A 202 2.89e-16 a.4.1.9,a.121.1.1 136960,136961 2fbqA 235 3.02e-16 a.4.1.9,a.121.1.1 133256,133257 2gfnA 209 3.09e-16 a.4.1.9,a.121.1.1 135101,135102 3bqyA 209 3.65e-16 2o7oA 207 5.06e-16 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 8.12e-16 2g3bA 208 8.94e-16 a.4.1.9,a.121.1.1 134558,134559 2optA 234 1.06e-15 1a6i 217 1.10e-15 3bjbA 207 1.33e-15 2np5A 203 1.84e-15 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 3.18e-15 2dg8A 193 3.27e-15 2tct 207 3.30e-15 2rekA 199 3.53e-15 2g7gA 213 3.61e-15 a.4.1.9,a.121.1.1 134732,134733 1t33A 224 3.92e-15 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 5.25e-15 2guhA 214 6.49e-15 2oerA 214 6.96e-15 2qwtA 196 8.46e-15 2eh3A 179 1.09e-14 2fd5A 180 1.15e-14 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 1.60e-14 1z0xA 220 3.72e-14 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 1.17e-13 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 2.42e-13 2g7lA 243 6.48e-13 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 2.58e-12 1hlvA 131 1.080 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.922 2pg4A 95 5.645 1a0p 290 6.646 2dt5A 211 9.797 a.4.5.38,c.2.1.12 131708,131709 1vbjA 281 9.857 2ekcA 262 9.919 2on5A 206 10.68 1g8lA 411 10.70 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2rn7A 108 11.24 2hnlA 225 12.95 3ddeA 239 13.72 1cjgA 62 14.47 a.35.1.5 17112 1wdcC 156 14.80 a.39.1.5 17317 1xo0A 324 15.39 a.60.9.1,d.163.1.1 115674,115675 1on2A 142 15.77 a.4.5.24,a.76.1.1 87103,87104 2rcyA 262 15.85 1jlwA 219 16.55 a.45.1.1,c.47.1.5 71741,71742 1j09A 468 17.66 a.97.1.1,c.26.1.1 77025,77026 3bkbA 377 19.98 1xcbA 211 20.44 a.4.5.38,c.2.1.12 109552,109553 1xsvA 113 20.71 a.4.13.3 116003 1fseA 74 20.96 a.4.6.2 60000 2v9vA 135 22.39 1je8A 82 24.64 a.4.6.2 77108 1ho8A 480 25.66 a.118.1.9 61107 3dbwA 226 26.96 1fnsA 196 28.41 c.62.1.1 34136 1ct5A 256 28.97 c.1.6.2 28663 2o3fA 111 29.10 1lvaA 258 29.19 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2pvfA 334 29.35 1zljA 78 30.55 1s7oA 113 32.30 a.4.13.3 105354 2o09A 189 32.56 3cbuA 214 32.78 2bjcA 62 33.53 a.35.1.5 128620 4crxA 322 33.67 a.60.9.1,d.163.1.1 18095,42155 3bbyA 215 34.32 2r8wA 332 35.27 1lufA 343 35.64 d.144.1.7 78223 1f2eA 201 37.46 a.45.1.1,c.47.1.5 17745,33039 1m48A 133 40.95 a.26.1.2 74443 2eb2A 334 41.18 2dh2A 424 41.92 1zcbA 362 42.51 a.66.1.1,c.37.1.8 124901,124902 3c6gA 479 44.26 1ltqA 301 44.48 c.108.1.9,c.37.1.1 78208,78209 1w07A 659 47.86 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1jlvA 209 48.87 a.45.1.1,c.47.1.5 71729,71730 2g3fA 421 51.38 1m5yA 408 52.00 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1p4wA 99 52.80 a.4.6.2 87783 1sedA 117 52.93 a.219.1.1 105449 2dtr 226 54.31 1f1eA 154 55.18 a.22.1.2 64927 2reiA 318 56.79 1fw1A 216 57.68 a.45.1.1,c.47.1.5 60051,60052 1s69A 124 57.68 a.1.1.1 105305 2qolA 376 58.08 1sfxA 109 58.19 a.4.5.50 105505 2fnaA 357 59.46 a.4.5.11,c.37.1.20 133809,133810 2hiqA 113 62.40 d.58.4.12 136529 1nhyA 219 62.46 a.45.1.1,c.47.1.5 80520,80521 1vr5A 547 66.98 c.94.1.1 120437 1lrrA 131 67.19 d.228.1.1 78165 2q88A 257 67.49 1k2pA 263 68.50 d.144.1.7 72012 3b2tA 311 69.93 1yn9A 169 70.58 3cblA 377 71.17 1anfA 370 75.15 c.94.1.1 35776 2o8xA 70 78.58 1n2aA 201 79.92 a.45.1.1,c.47.1.5 91553,91554 1gkzA 388 81.73 a.29.5.1,d.122.1.4 65268,65269 1ijbA 202 82.31 c.62.1.1 71229 1svsA 353 82.60 c.37.1.8 106051 1qqcA 773 82.95 c.55.3.5,e.8.1.1 33724,43013 1s1iG 119 83.28 i.1.1.1 105181 1wdvA 152 84.12 d.116.1.1 114539 1a0fA 201 84.24 a.45.1.1,c.47.1.5 17737,33031 2ghaA 382 84.87 1s50A 259 87.70 c.94.1.1 118864 2qguA 211 89.30 2cx5A 158 89.87