# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	6.96e-13		
2pliA	91	2.32e-12		
2p13A	90	2.78e-12		
2r2zA	93	4.31e-12		
2o1rA	81	4.82e-12		
2p4pA	86	1.08e-11		
2nqwA	93	3.45e-11		
2oaiA	94	3.54e-11		
2rk5A	87	7.09e-11		
2p3hA	101	2.51e-09		
1ei7A	158	0.2456	a.24.5.1	16584
2vfrA	422	1.896		
1pbwA	216	2.716	a.116.1.1	19103
2pp6A	102	2.768		
1hskA	326	3.072	d.145.1.2,d.146.1.1	61241,61242
1w24A	182	3.903	d.159.1.7	120579
1l0iA	78	6.428	a.28.1.1	77643
1pn0A	665	7.397	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2bvfA	459	10.20		
1zr6A	503	10.91		
1wvfA	520	11.47	d.58.32.1,d.145.1.1	121337,121338
2bmaA	470	13.07		
2obwA	258	17.10		
2c4nA	250	18.20	c.108.1.14	129837
1t8kA	77	18.86	a.28.1.1	106666
1uxy	340	19.79		
2gcuA	245	21.94		
2qxfA	482	25.06		
1f80D	81	25.36	a.28.1.1	59686
1fm0D	81	27.55	d.15.3.1	37642
2p18A	311	27.72		
2qedA	258	28.10		
2ipiA	521	30.10		
1zjjA	263	31.97		
2yw2A	424	36.77		
2giaB	187	36.95	d.18.1.4	135222
2yvsA	219	37.42		
1e8gA	560	37.89	d.58.32.1,d.145.1.1	39455,41718
1p9kA	79	38.75	d.66.1.6	94392
2exrA	524	45.41		
1nd6A	354	47.52	c.60.1.2	80407
2i0kA	561	47.76		
2d74B	148	48.12		
1tt0A	623	48.19		
2cx4A	164	49.30	c.47.1.10	130973
2uuuA	584	51.13		
1vkuA	100	51.46	a.28.1.1	108690
2ey4C	82	52.39	b.43.3.5	132582
3ddyA	186	53.29		
2qnwA	82	53.38		
1n62B	809	53.42	d.41.1.1,d.133.1.1	80092,80093
2dkoA	146	54.10		
2gmnA	274	54.29		
1j83A	180	59.19	b.18.1.12	66430
1vjrA	271	62.92	c.108.1.14	100832
2jrnA	163	64.53		
2amwA	83	67.67		
2q4wA	524	67.77		
2ywnA	157	70.15		
2qv2A	342	71.26		
1r6jA	82	72.30	b.36.1.1	97151
1c02A	166	72.36	a.24.10.2	16633
1qh5A	260	76.46	d.157.1.2	42057
2ehsA	77	77.97		
1vioA	243	79.70	d.265.1.3,d.66.1.5	100762,100763
1ahlA	49	80.03	g.9.1.1	44601
1kzlA	208	80.80	b.43.4.3,b.43.4.3	77635,77636
1f0kA	364	81.91	c.87.1.2	35465
1a3wA	500	83.21	b.58.1.1,c.1.12.1,c.49.1.1	27060,29288,33142
1n1cA	217	83.66	a.184.1.1	85254
1i8dA	213	84.77	b.43.4.3,b.43.4.3	61953,61954