Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1vj1A	1.1477e+01	1vj1A/T0500-1vj1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.35.1.2 c.2.1.1
2qg3A	1.3588e+01	2qg3A/T0500-2qg3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tu1A	2.5260e+01	1tu1A/T0500-1tu1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.107.1.3
2dm6A	2.6746e+01	2dm6A/T0500-2dm6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.35.1.2 c.2.1.1
2cp9A	2.7138e+01	2cp9A/T0500-2cp9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.5.2.2
1lopA	3.2132e+01	1lopA/T0500-1lopA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.62.1.1
2j3hA	3.5785e+01	2j3hA/T0500-2j3hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bs2A	4.4017e+01	2bs2A/T0500-2bs2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.7.3.1 c.3.1.4 d.168.1.1
1yewA	4.7359e+01	1yewA/T0500-1yewA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yt5A	5.0787e+01	1yt5A/T0500-1yt5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gs8A	5.5459e+01	2gs8A/T0500-2gs8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cx5F	5.5660e+01	3cx5F/T0500-3cx5F-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ptq	5.6408e+01	1ptq/T0500-1ptq-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zsyA	6.2626e+01	1zsyA/T0500-1zsyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1f0nA	6.4237e+01	1f0nA/T0500-1f0nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.69.1.3
2jgoA	6.4469e+01	2jgoA/T0500-2jgoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1slqA	6.6507e+01	1slqA/T0500-1slqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.47.1.1
1lzjA	6.7519e+01	1lzjA/T0500-1lzjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.68.1.9
2ywxA	7.0649e+01	2ywxA/T0500-2ywxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lt4A	7.7450e+01	1lt4A/T0500-1lt4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.166.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001