# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj1A	363	1.736	b.35.1.2,c.2.1.1	100794,100795
2qg3A	208	3.193		
2bs2A	660	3.227	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
2cp9A	64	5.265	a.5.2.2	130696
2dm6A	333	5.673	b.35.1.2,c.2.1.1	131567,131568
1tu1A	148	8.777	d.107.1.3	107316
2j3hA	345	11.07		
1hkvA	453	12.30	b.49.2.3,c.1.6.1	83559,83560
1lopA	164	14.36	b.62.1.1	27510
1lzjA	292	16.64	c.68.1.9	74352
1lt4A	247	17.27	d.166.1.1	42231
1zsyA	357	17.65		
1uqwA	509	17.72	c.94.1.1	99799
3cx5F	146	19.04		
2o0tA	467	20.33		
2gs8A	317	20.79		
1lt3A	240	24.77	d.166.1.1	42230
1ptq	50	25.41		
2pk8A	103	26.59	d.274.1.1	139707
2ywxA	157	33.18		
2dsyA	87	34.59		
1xbyA	216	35.81	c.1.2.3	121846
1slqA	278	37.08	f.47.1.1	105719
1lvl	458	40.61		
1a05A	358	43.22	c.77.1.1	35059
2c0cA	362	49.32		
2jgoA	31	50.22		
1jb1A	205	52.22	c.91.1.2	62832
1tufA	434	52.30	b.49.2.3,c.1.6.1	107335,107336
2ak3A	226	55.34	c.37.1.1,g.41.2.1	31892,45193
1r0dA	206	61.41	a.216.1.1	104715
1a8sA	273	62.13	c.69.1.12	34710
2oszA	93	62.79		
2vcyA	344	64.31		
1iojA	57	71.06	j.39.1.1	46293
1ocsA	162	74.78	d.189.1.1	92776
2daqA	110	75.04	b.34.9.2	131354
1yt5A	258	76.55		
1j33A	335	77.30	c.39.1.1	77069
1ohtA	215	77.38	d.118.1.1	87036
1yewA	382	79.07		
1xr4A	509	81.59	c.124.1.2,c.124.1.2	115860,115861
1ay7B	89	83.47	c.9.1.1	30836
1ass	159	83.53		
1jy2N	53	83.88	h.1.8.1	67440
1wgzA	510	84.72		
1g8oA	310	85.89	c.68.1.9	60375
1z0sA	278	86.19	e.52.1.1	124328
2cx6A	90	88.88	c.9.1.1	130981