# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj1A	363	0.7072	b.35.1.2,c.2.1.1	100794,100795
2qg3A	208	2.069		
1yewA	382	4.072		
2bs2A	660	4.140	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1tu1A	148	4.289	d.107.1.3	107316
2j3hA	345	4.579		
2dm6A	333	4.815	b.35.1.2,c.2.1.1	131567,131568
1lopA	164	6.849	b.62.1.1	27510
2cp9A	64	7.525	a.5.2.2	130696
1yt5A	258	10.32		
1zsyA	357	12.24		
1lzjA	292	12.90	c.68.1.9	74352
1ptq	50	13.88		
1slqA	278	13.93	f.47.1.1	105719
1f0nA	285	19.25	c.69.1.3	34636
1z0sA	278	20.25	e.52.1.1	124328
1a8sA	273	21.16	c.69.1.12	34710
2pk8A	103	21.53	d.274.1.1	139707
1a05A	358	21.54	c.77.1.1	35059
2gs8A	317	22.36		
1cvsC	225	22.68	b.1.1.4,b.1.1.4	21726,21727
1hkvA	453	28.41	b.49.2.3,c.1.6.1	83559,83560
2dsyA	87	30.67		
2ak3A	226	32.33	c.37.1.1,g.41.2.1	31892,45193
1uqwA	509	35.60	c.94.1.1	99799
2ibpA	409	36.32		
3cx5F	146	36.65		
2vcyA	344	39.33		
2as9A	210	41.01		
1r0dA	206	41.03	a.216.1.1	104715
1iojA	57	42.88	j.39.1.1	46293
1yycA	174	44.86		
2jgoA	31	45.70		
1xgwA	176	45.95		
1xa0A	328	49.72	b.35.1.2,c.2.1.1	115021,115022
2o0tA	467	50.30		
2ywxA	157	50.71		
1ptqA	50	52.03	g.49.1.1	45349
1vffA	423	52.93	c.1.8.4	120033
1jb1A	205	54.29	c.91.1.2	62832
2oszA	93	55.05		
1lt4A	247	55.79	d.166.1.1	42231
2dvkA	188	56.13		
2an1A	292	56.21		
1cosA	31	57.09	k.4.1.1	46405
2eavA	165	57.53		
1j33A	335	60.04	c.39.1.1	77069
1cm7A	363	60.15	c.77.1.1	35063
1dqyA	283	61.39	c.69.1.3	34640
1zoiA	276	61.93		
2c0cA	362	62.14		
3cpxA	321	64.21		
1lvl	458	64.34		
1ohtA	215	64.40	d.118.1.1	87036
1ocsA	162	65.47	d.189.1.1	92776
1suwA	249	68.34	e.52.1.1	106027
3bbpD	71	69.03		
1tufA	434	72.55	b.49.2.3,c.1.6.1	107335,107336
1wgzA	510	72.58		
1h0aA	158	73.13	a.118.9.1	76434
1l3sA	580	73.53	c.55.3.5,e.8.1.1	84521,84522
2bqxA	173	75.55		
1vqoD	177	81.23	d.77.1.1	120365
1lt3A	240	84.57	d.166.1.1	42230
1oniA	137	84.67	d.79.1.1	87144
2hsaA	402	86.33		
1ds1A	324	88.88	b.82.2.2	28127
2rm8A	68	89.19		
2px6A	316	89.53		
1a5kC	566	89.73	b.92.1.1,c.1.9.2	28425,29047