# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg3A	208	3.090		
1vj1A	363	4.927	b.35.1.2,c.2.1.1	100794,100795
1lopA	164	6.047	b.62.1.1	27510
2dm6A	333	6.914	b.35.1.2,c.2.1.1	131567,131568
2cp9A	64	8.218	a.5.2.2	130696
2bs2A	660	9.637	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1tu1A	148	10.87	d.107.1.3	107316
1yt5A	258	12.12		
1slqA	278	14.04	f.47.1.1	105719
1ptq	50	14.49		
1yewA	382	15.47		
1zsyA	357	17.78		
3cx5F	146	18.38		
2j3hA	345	18.83		
2gs8A	317	20.49		
2dsyA	87	21.92		
1hkvA	453	25.52	b.49.2.3,c.1.6.1	83559,83560
1lzjA	292	25.74	c.68.1.9	74352
1jb1A	205	26.38	c.91.1.2	62832
2pk8A	103	26.51	d.274.1.1	139707
2jgoA	31	28.97		
1yycA	174	29.37		
2fggA	101	33.12	d.50.5.1	133438
2eavA	165	33.30		
1ocsA	162	34.42	d.189.1.1	92776
1l3sA	580	36.46	c.55.3.5,e.8.1.1	84521,84522
1cvsC	225	38.83	b.1.1.4,b.1.1.4	21726,21727
2ywxA	157	40.04		
1r0dA	206	45.09	a.216.1.1	104715
2cx6A	90	46.40	c.9.1.1	130981
2eaxA	164	47.33		
1oniA	137	47.39	d.79.1.1	87144
1xwl	580	50.56		
1a8sA	273	55.85	c.69.1.12	34710
1tufA	434	56.92	b.49.2.3,c.1.6.1	107335,107336
1ptqA	50	57.47	g.49.1.1	45349
1xa0A	328	57.79	b.35.1.2,c.2.1.1	115021,115022
1xbyA	216	59.00	c.1.2.3	121846
1iojA	57	59.18	j.39.1.1	46293
2dvkA	188	60.21		
2vcyA	344	62.18		
1cosA	31	65.01	k.4.1.1	46405
2oszA	93	65.12		
1a05A	358	65.38	c.77.1.1	35059
1ay7B	89	66.52	c.9.1.1	30836
2o0tA	467	70.88		
1kbeA	49	74.27	g.49.1.1	68380
2bdpA	580	76.95	c.55.3.5,e.8.1.1	33709,43002
2ak3A	226	77.38	c.37.1.1,g.41.2.1	31892,45193
3bbpD	71	78.46		
1f0nA	285	79.08	c.69.1.3	34636
1z0sA	278	81.24	e.52.1.1	124328
1x7vA	99	81.95	d.58.4.11	109501
2f2lX	167	83.68	d.118.1.1	132844
2c0cA	362	84.26		
1u4qA	322	85.40	a.7.1.1,a.7.1.1,a.7.1.1	113024,113025,113026
2rm8A	68	85.64		
1bcfA	158	86.50	a.25.1.1	16648
1qd9A	124	89.54	d.79.1.1	39758