# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hqsA 423 0.8275 c.77.1.1 61154 2ds3A 761 1.054 2nn6B 249 1.392 1xa0A 328 3.205 b.35.1.2,c.2.1.1 115021,115022 2op6A 152 3.965 2jejA 358 5.746 d.240.1.1,e.8.1.7 138284,138285 3c61A 314 6.259 1uqwA 509 6.990 c.94.1.1 99799 1e3mA 800 7.566 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1yppA 286 9.443 b.40.5.1 25407 1gaxA 862 9.868 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2e3jA 356 12.36 1hkbA 917 12.64 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1yuwA 554 14.25 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2a6hD 1524 15.64 e.29.1.2 126265 1qvbA 481 16.38 c.1.8.4 28983 1wb9A 800 16.58 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 2dm6A 333 16.87 b.35.1.2,c.2.1.1 131567,131568 2eceA 462 17.30 1r30A 369 18.95 c.1.28.1 96895 2as0A 396 19.44 b.122.1.9,c.66.1.51 127227,127228 2dpiA 420 22.00 d.240.1.1,e.8.1.7 131612,131613 1c0aA 585 22.42 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 2hoxA 427 24.57 c.67.1.1 136644 2b43A 526 24.89 1ji1A 637 25.33 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2z1mA 345 26.44 1xadA 345 26.61 c.77.1.1 35055 1vheA 373 30.22 b.49.3.1,c.56.5.4 100669,100670 2b4gA 317 31.12 c.1.4.1 127829 4aahA 571 31.40 b.70.1.1 27678 1vjpA 394 31.66 c.2.1.3,d.81.1.3 100828,100829 1pb1A 416 31.71 c.77.1.1 88014 2aouA 292 31.76 c.66.1.19 127100 2hpkA 208 32.44 2zf5O 497 33.08 1cnvA 299 35.05 c.1.8.5 28989 1jy2N 53 37.83 h.1.8.1 67440 3d3iA 761 37.90 1a0cA 438 39.52 c.1.15.3 29529 1xl7A 612 39.53 c.43.1.3,c.43.1.3 115438,115439 2j3hA 345 39.59 1cnzA 363 39.64 c.77.1.1 35061 1bihA 395 39.65 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1quuA 250 40.34 a.7.1.1,a.7.1.1 16320,16321 1kdvA 370 40.75 c.41.1.2 68486 2pmbA 462 40.81 1dpeA 507 41.35 c.94.1.1 35799 3cpxA 321 41.80 2cp9A 64 41.82 a.5.2.2 130696 1yewA 382 42.50 1kf6B 243 42.76 a.1.2.1,d.15.4.2 72397,72398 1tu1A 148 42.90 d.107.1.3 107316 2icrA 237 43.10 1mroB 442 43.41 a.89.1.1,d.58.31.2 18531,39449 2ob9A 130 46.62 1yt5A 258 46.90 1ox0A 430 47.04 c.95.1.1,c.95.1.1 87495,87496 1cf2O 337 48.05 c.2.1.3,d.81.1.1 29994,39909 2j04B 524 51.16 1k75A 434 52.44 c.82.1.2 68253 2hw2A 143 52.47 2p3zA 415 54.61 2oi2A 292 56.73 2bceA 585 56.79 c.69.1.1 34625 1k89 449 56.94 3csyI 334 58.99 1uwsA 489 59.63 c.1.8.4 108073 1ne7A 289 60.71 c.124.1.1 91833 2yv5A 302 61.06 1hh1A 143 61.86 c.52.1.18 61036 1a5mC 566 61.97 b.92.1.1,c.1.9.2 28423,29045 2at2A 300 62.44 c.78.1.1,c.78.1.1 35196,35197 1vypX 364 65.02 c.1.4.1 108905 1zkpA 268 66.62 d.157.1.9 125205 1jeyA 609 69.00 b.131.1.1,c.62.1.3 90370,90371 2gl5A 410 70.42 c.1.11.2,d.54.1.1 135336,135337 1zxmA 400 70.96 1j6wA 175 71.35 d.185.1.2 62663 1lk9A 448 71.53 c.67.1.1 78057 1tt7A 330 72.26 b.35.1.2,c.2.1.1 112623,112624 1u3dA 509 75.56 a.99.1.1,c.28.1.1 107638,107639 2ajrA 331 76.57 c.72.1.1 126892 1jchA 551 77.07 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1ile 821 77.46 1p32A 209 83.87 d.25.1.1 38379 2ppvA 332 84.31 1atg 231 87.25 1io1A 398 88.04 e.32.1.1 62611 2i87A 364 88.33 2eihA 343 88.68 1flzA 228 89.81 c.18.1.1 31027