# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj1A	363	0.6954	b.35.1.2,c.2.1.1	100794,100795
1lopA	164	2.783	b.62.1.1	27510
1tu1A	148	3.338	d.107.1.3	107316
2qg3A	208	4.645		
1yewA	382	4.758		
1z0sA	278	6.259	e.52.1.1	124328
2j3hA	345	6.907		
1yt5A	258	6.932		
2dm6A	333	8.184	b.35.1.2,c.2.1.1	131567,131568
2cp9A	64	8.494	a.5.2.2	130696
1ptq	50	13.53		
1ezvA	430	13.58	d.185.1.1,d.185.1.1	59541,59542
1suwA	249	16.14	e.52.1.1	106027
2bs2A	660	20.45	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
1kb9A	431	21.50	d.185.1.1,d.185.1.1	77311,77312
1zsyA	357	24.01		
1lzjA	292	24.61	c.68.1.9	74352
1f0nA	285	24.97	c.69.1.3	34636
1slqA	278	25.53	f.47.1.1	105719
2gs8A	317	26.05		
2as9A	210	27.23		
1tm0A	350	27.65	d.21.1.3	107147
1ds1A	324	31.16	b.82.2.2	28127
1yycA	174	31.63		
1xa0A	328	32.21	b.35.1.2,c.2.1.1	115021,115022
2bqxA	173	36.05		
2an1A	292	39.77		
1iojA	57	41.31	j.39.1.1	46293
2dvkA	188	41.48		
1a05A	358	42.87	c.77.1.1	35059
1iq4A	179	45.07	d.77.1.1	62641
2eavA	165	45.85		
2jf2A	264	47.32	b.81.1.1	138289
1cvsC	225	47.62	b.1.1.4,b.1.1.4	21726,21727
2pk8A	103	47.68	d.274.1.1	139707
2vcyA	344	48.36		
1awsA	164	49.82	b.62.1.1	27431
1vqoD	177	50.11	d.77.1.1	120365
1ptqA	50	50.26	g.49.1.1	45349
3cx5F	146	50.74		
1l1jA	239	51.27	b.47.1.1	84516
1vdnA	162	55.17	b.62.1.1	120006
1a8sA	273	56.82	c.69.1.12	34710
1d5mB	192	58.41	b.1.1.2,d.19.1.1	21618,38192
1f3vA	179	60.05	d.58.22.1	39382
1hkvA	453	62.52	b.49.2.3,c.1.6.1	83559,83560
1b6aA	478	65.02	a.4.5.25,d.127.1.1	16223,41160
1tt7A	330	65.03	b.35.1.2,c.2.1.1	112623,112624
1vffA	423	65.27	c.1.8.4	120033
1jb1A	205	65.58	c.91.1.2	62832
2eaxA	164	65.69		
1qorA	327	68.55	b.35.1.2,c.2.1.1	24766,29782
2ak3A	226	70.00	c.37.1.1,g.41.2.1	31892,45193
2jgoA	31	71.16		
1ub4A	110	71.66	b.34.6.2	88399
2oszA	93	74.63		
2ibpA	409	76.99		
2ywxA	157	80.05		
1hqsA	423	84.52	c.77.1.1	61154
3bzwA	274	84.91		
1ay7B	89	86.29	c.9.1.1	30836
1uqwA	509	88.44	c.94.1.1	99799