# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg3A	208	4.643		
1i2oA	316	4.647	c.1.10.1	61574
1ezvD	245	9.048	a.3.1.3,f.23.11.1	59546,59547
1zvfA	176	11.93		
1mv3A	213	14.26	b.34.2.1	91468
1vj1A	363	15.37	b.35.1.2,c.2.1.1	100794,100795
1bccD	241	19.22	a.3.1.3,f.23.11.1	15959,43698
1pcaA	95	19.33	d.58.3.1	39063
1tu1A	148	20.05	d.107.1.3	107316
1yfuA	174	20.64	b.82.1.20	123094
1qcrF	103	22.06	f.27.1.1	43676
1f0nA	285	24.76	c.69.1.3	34636
1yt5A	258	24.89		
1pytA	94	25.38	d.58.3.1	39064
2daqA	110	25.62	b.34.9.2	131354
1cvsC	225	27.09	b.1.1.4,b.1.1.4	21726,21727
1onrA	316	28.46	c.1.10.1	29169
3cx5D	248	30.46		
1ppjF	110	30.61	f.27.1.1	104262
1n13B	113	30.95		
1xgwA	176	32.62		
2oszA	93	34.78		
2zbcA	83	35.72		
1imuA	107	37.83	d.204.1.1	66218
7odcA	424	38.66	b.49.2.3,c.1.6.1	26488,28650
1ub4A	110	38.69	b.34.6.2	88399
2cp9A	64	39.62	a.5.2.2	130696
3cx5F	146	39.70		
1h0aA	158	40.45	a.118.9.1	76434
2nvaA	372	41.10		
3ezmA	101	42.46	b.89.1.1	28395
2bqxA	173	45.74		
2c5qA	240	50.33		
1zotA	358	50.65		
1y0gA	191	50.70	b.61.6.1	116299
1uwwA	191	52.22	b.18.1.23	108079
1kb9G	125	55.02	f.27.1.1	77322
1cb7B	483	55.53	c.1.19.2	29648
1y10A	407	55.79		
1bw3A	125	56.90	b.52.1.2	26899
1gaxA	862	57.80	b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1	26893,31595,75842,75843
1u3eM	174	58.44	d.4.1.3,d.285.1.1	107640,107641
1gtmA	419	59.58	c.2.1.7,c.58.1.1	30223,33871
1vpvA	300	62.90	c.119.1.1	113975
1t3wA	148	62.94	a.236.1.1	112233
2csbA	519	62.96	a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1	130751,130752,130753,130754,130755
1d7kA	421	67.16	b.49.2.3,c.1.6.1	26486,28648
1u34A	119	68.38	g.76.1.1	107634
1lnzA	342	74.19	b.117.1.1,c.37.1.8	78112,78113
2bs2A	660	74.21	a.7.3.1,c.3.1.4,d.168.1.1	129030,129031,129032
2b78A	385	74.83	b.122.1.9,c.66.1.51	128025,128026
1z7aA	308	75.10	c.6.2.6	124591
2ox6A	166	76.63		
1dqyA	283	79.43	c.69.1.3	34640
2dm6A	333	79.73	b.35.1.2,c.2.1.1	131567,131568
1sa0E	143	80.57	a.137.10.1	98777
2j3hA	345	80.80		
2ywxA	157	82.59		
2gmgA	105	82.65		
3cnwA	148	83.74		
2cycA	375	84.85		
1r88A	280	85.95	c.69.1.3	97219
1p0yA	444	86.96	a.166.1.1,b.85.7.3	87654,87655
2ojqA	348	89.06		
2b99A	156	89.06		
2ak3A	226	89.24	c.37.1.1,g.41.2.1	31892,45193