# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1f0nA	285	4.141	c.69.1.3	34636
1i2oA	316	4.437	c.1.10.1	61574
2qg3A	208	7.213		
1dqyA	283	8.522	c.69.1.3	34640
1r88A	280	9.400	c.69.1.3	97219
2c5qA	240	10.90		
1vj1A	363	13.11	b.35.1.2,c.2.1.1	100794,100795
1yt5A	258	15.58		
1jykA	254	16.33	c.68.1.13	67458
2dm6A	333	21.15	b.35.1.2,c.2.1.1	131567,131568
1z0sA	278	22.00	e.52.1.1	124328
2j9iA	421	30.20		
1gtmA	419	30.21	c.2.1.7,c.58.1.1	30223,33871
1uwwA	191	32.05	b.18.1.23	108079
2gs8A	317	35.50		
2b0mA	393	37.40	c.1.4.1	127644
2qg7A	458	38.52		
1zvfA	176	39.57		
3cnwA	148	41.09		
1lt4A	247	41.74	d.166.1.1	42231
2cp9A	64	45.05	a.5.2.2	130696
2govA	195	45.06	d.60.1.4	135447
2j3hA	345	45.32		
1atiA	505	46.19	c.51.1.1,d.104.1.1	33196,40745
3cbgA	232	47.74		
1zotA	358	49.88		
2d3jA	157	50.46		
3cx5F	146	50.49		
1dqzA	280	52.32	c.69.1.3	34638
1onrA	316	52.36	c.1.10.1	29169
2yyyA	343	54.56		
2oszA	93	55.64		
1slqA	278	56.31	f.47.1.1	105719
1suwA	249	56.88	e.52.1.1	106027
2dsyA	87	57.98		
1ll7A	392	58.79	c.1.8.5,d.26.3.1	78085,78086
1py0A	125	59.00	b.6.1.1	111645
2nvaA	372	63.16		
1adwA	123	63.57	b.6.1.1	22893
1xa0A	328	65.92	b.35.1.2,c.2.1.1	115021,115022
1l1jA	239	66.46	b.47.1.1	84516
1lnzA	342	66.75	b.117.1.1,c.37.1.8	78112,78113
1yfuA	174	66.95	b.82.1.20	123094
1l3sA	580	68.45	c.55.3.5,e.8.1.1	84521,84522
2hfsA	332	69.62		
2rh0A	157	76.50		
1jjfA	268	76.50	c.69.1.2	66765
2zbcA	83	76.79		
2or0A	414	77.27		
2a46A	238	85.75		
2a8yA	270	86.43		
1qcrF	103	87.02	f.27.1.1	43676