# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1h8dH	260	6.165		
1mu5A	471	6.326	a.156.1.3,d.14.1.3,d.122.1.2	79472,79473,79474
1knxA	312	6.900	c.98.2.1,c.91.1.2	77459,77460
1ni3A	392	7.311	c.37.1.8,d.15.10.2	80531,80532
1twfC	318	10.92	d.74.3.1,d.181.1.1	112727,112728
2iblA	130	12.29		
1mmoB	384	12.89	a.25.1.2	16768
1mhyB	395	14.07	a.25.1.2	16781
1ezvD	245	14.52	a.3.1.3,f.23.11.1	59546,59547
1jchA	551	14.92	b.101.1.1,b.110.1.1,h.4.9.1	66491,66492,66493
1lt4A	247	14.95	d.166.1.1	42231
1yn9A	169	16.10		
1ox3A	109	17.06	h.1.17.1	93668
2fafA	608	17.15		
1umpA	631	17.65	a.102.4.2,a.102.4.2	99619,99620
1ppjD	241	18.36	a.3.1.3,f.23.11.1	104258,104259
1twfK	120	19.04	d.74.3.2	112736
1mtyB	384	19.16	a.25.1.2	16740
2ossA	127	22.81		
2o3hA	285	22.89		
2nx8A	179	24.48		
1bix	287	25.42		
1w7oA	118	25.65	a.138.1.1	114318
1yh2A	175	26.02	d.20.1.1	123158
1jixA	351	27.55	c.87.1.1	63081
2cy3A	118	28.98	a.138.1.1	19649
1l5xA	280	29.88	c.106.1.1	77718
1h5rA	293	30.32	c.68.1.6	65623
1kb9D	246	33.20	a.3.1.3,f.23.11.1	77317,77318
1mp4A	292	33.96	c.68.1.6	79376
2q7sA	290	35.11		
1zhvA	134	36.42	d.58.18.8,d.58.18.8	125109,125110
1tt0A	623	41.73		
2qf2A	624	43.45		
1bqk	124	44.04		
2q0lA	311	44.40		
1bt3A	345	45.33	a.86.1.2	18507
2jdiH	146	47.15	a.2.10.1,b.93.1.1	138273,138274
1mc3A	296	50.54	c.68.1.6	78943
1wgmA	98	51.37	g.44.1.2	114616
2pa8D	265	54.38		
1hxpA	348	55.13	d.13.1.2,d.13.1.2	37530,37531
3cx5D	248	57.83		
1gaxA	862	58.67	b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1	26893,31595,75842,75843
2z69A	154	63.76		
1fxoA	293	64.76	c.68.1.6	34524
1jb1A	205	66.38	c.91.1.2	62832
1jd1A	129	66.48	d.79.1.1	62890
1qd9A	124	67.65	d.79.1.1	39758
1c3jA	351	69.08	c.87.1.1	35459
2dlwA	113	69.31		
2ftwA	521	69.76	b.92.1.3,c.1.9.6	134083,134084
2k3iA	109	70.36		
1gveA	327	73.79	c.1.7.1	70597
1mx0A	472	73.94	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
2nn6H	308	74.79		
2fpqA	444	75.67		
1wp5A	323	75.73	b.68.10.1	114780
1d2vA	104	77.06	a.93.1.2	18697
3ctzA	623	77.30		
1tzlA	622	78.20	c.3.1.2,d.16.1.1	112876,112877
1b6cB	342	78.33	d.144.1.7	41673
2ywxA	157	78.90		
2cvlA	124	79.06	d.79.1.1	130871
1khbA	625	80.90	c.91.1.1,c.109.1.1	68606,68607
1u96A	69	81.77	a.17.1.2	113232
2qu8A	228	84.55		
1biaA	321	85.79	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787