# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o7qA 289 0.5145 c.68.1.9 92626 2gw3A 225 1.569 1xmzA 241 1.879 2oszA 93 2.009 2dddA 225 2.274 1lzjA 292 2.280 c.68.1.9 74352 2icrA 237 3.109 2ib5A 233 3.322 2qg3A 208 3.857 2ogrA 229 4.069 2c9jA 223 4.127 2ie2A 222 6.010 2dvkA 188 6.296 1tt7A 330 6.503 b.35.1.2,c.2.1.1 112623,112624 2eihA 343 6.861 2ds3A 761 7.117 1yb5A 351 7.464 b.35.1.2,c.2.1.1 116601,116602 1qorA 327 7.714 b.35.1.2,c.2.1.1 24766,29782 2a0b 125 9.449 2hqkA 219 9.753 2qjjA 402 10.31 1wlyA 333 11.58 1a3qA 285 12.80 b.1.18.1,b.2.5.3 21932,22447 1u3wA 374 12.93 b.35.1.2,c.2.1.1 113013,113014 2p4mA 219 15.81 3cx5F 146 16.87 1vj0A 380 17.95 b.35.1.2,c.2.1.1 100786,100787 1imtA 80 18.18 g.3.10.1,g.3.10.1 44201,44202 1zgoA 223 18.67 1b5qA 472 19.64 c.3.1.2,d.16.1.5 30404,37968 2cdcA 366 20.03 1p0fA 373 20.77 b.35.1.2,c.2.1.1 87642,87643 1f3vA 179 20.85 d.58.22.1 39382 1dg9A 157 22.03 c.44.1.1 32637 1fd9A 213 22.07 d.26.1.1 59771 2jgoA 31 22.76 2zcwA 202 23.10 2itmA 484 23.15 2h5oA 234 23.47 1q6uA 245 23.69 d.26.1.1 95998 1qfxA 460 25.68 c.60.1.2 33994 2zc2A 78 26.01 1q6hA 224 27.91 d.26.1.1 95975 2iewA 363 28.43 2j9iA 421 29.32 1hcnB 145 29.44 g.17.1.4 44810 2q7sA 290 30.72 2jhqA 226 30.76 1s35A 214 31.01 a.7.1.1,a.7.1.1 98420,98421 1zvfA 176 32.51 4eugA 229 32.68 c.18.1.1 31019 1iq4A 179 34.87 d.77.1.1 62641 1s69A 124 35.42 a.1.1.1 105305 2rh7A 239 36.18 2pw8I 65 36.48 1cosA 31 36.87 k.4.1.1 46405 2posA 94 38.10 2pk8A 103 38.12 d.274.1.1 139707 3cx5C 385 38.39 2clyA 214 40.14 1yhfA 115 40.46 b.82.1.9 123176 1x65A 89 41.67 2gruA 368 43.09 2bi0A 337 44.90 d.38.1.4,d.38.1.4 128565,128566 1n8kA 374 45.55 b.35.1.2,c.2.1.1 80298,80299 1ufoA 238 45.96 c.69.1.27 99344 2qfaC 47 46.42 1fi4A 416 46.82 d.14.1.5,d.58.26.2 59847,59848 1gtmA 419 47.41 c.2.1.7,c.58.1.1 30223,33871 1aocA 175 47.48 g.17.1.5 44817 1tu1A 148 47.58 d.107.1.3 107316 1xgwA 176 52.29 2f1nA 262 52.70 d.151.1.1 132782 1zu0A 529 53.11 1zx4A 192 53.35 2b5wA 357 54.72 2nz7A 98 54.88 2arpF 152 55.00 2nrrA 159 59.47 1cunA 213 59.63 a.7.1.1,a.7.1.1 16313,16314 2dvyA 226 60.17 1t5bA 201 61.21 c.23.5.3 106433 1r0dA 206 61.22 a.216.1.1 104715 1e4cP 215 62.01 c.74.1.1 34969 1u5pA 216 63.74 a.7.1.1,a.7.1.1 113046,113047 2booA 247 63.88 2dq6A 870 64.74 1l3sA 580 64.98 c.55.3.5,e.8.1.1 84521,84522 2ih8A 559 67.52 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1yewA 382 68.72 1vlcA 366 69.21 c.77.1.1 108743 1f8fA 371 69.58 b.35.1.2,c.2.1.1 83246,83247 1ry9A 145 69.80 d.198.1.1 98094 2vcyA 344 72.42 2paqA 201 72.80 a.211.1.1 139643 2jbvA 546 73.53 2qywA 102 73.97 2aibA 98 75.72 a.134.1.1 126824 2j66A 428 77.93 2d5wA 603 78.06 2cf5A 357 78.50 1oaiA 59 78.81 a.5.2.3 81255 1t3jA 96 79.76 h.4.16.1 106356 1u4qA 322 80.97 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 2etdA 171 81.84 a.29.9.1 132353 2ekpA 239 82.67 1sq9A 397 85.58 b.69.4.1 105889 2z07A 420 86.05 2ox6A 166 86.52 1or4A 178 88.07 a.1.1.2 93447 1xqwA 293 89.13