# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2op6A 152 3.189 1hqsA 423 3.411 c.77.1.1 61154 1qorA 327 4.292 b.35.1.2,c.2.1.1 24766,29782 1hbnB 442 4.499 a.89.1.1,d.58.31.2 60900,60901 2eihA 343 4.601 2icrA 237 4.851 2ds3A 761 4.911 1uwsA 489 5.953 c.1.8.4 108073 2nn6B 249 8.384 2as0A 396 9.793 b.122.1.9,c.66.1.51 127227,127228 1xadA 345 10.94 c.77.1.1 35055 2e3jA 356 11.37 1tt7A 330 12.16 b.35.1.2,c.2.1.1 112623,112624 2fikA 287 13.76 b.1.1.2,d.19.1.1 133524,133525 1v0wA 506 14.22 d.136.1.2,d.136.1.2 108220,108221 2vcyA 344 14.83 2oi2A 292 17.76 2h8gA 267 17.87 1pb1A 416 18.44 c.77.1.1 88014 2oszA 93 21.54 2bnuA 203 22.31 2jbvA 546 22.42 1cnzA 363 24.57 c.77.1.1 35061 3csyI 334 25.79 1a0cA 438 26.48 c.1.15.3 29529 3bixA 574 26.65 1pyaB 228 26.76 2gagA 965 26.82 1e0tA 470 28.65 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1fd9A 213 29.93 d.26.1.1 59771 2dgmA 466 29.94 c.67.1.6 131508 2qcoA 210 30.05 1wyuB 474 31.43 c.67.1.7 121453 1v4vA 376 31.73 c.87.1.3 100313 2d5wA 603 32.17 1reqB 637 32.22 c.1.19.1,c.23.6.1 29621,31248 1kxuA 333 33.35 a.74.1.1,a.74.1.1 18358,18359 2r1fA 270 33.66 1fi4A 416 34.21 d.14.1.5,d.58.26.2 59847,59848 2zf5O 497 35.78 1qg4A 216 38.49 c.37.1.8 32035 1kqfB 294 39.06 d.58.1.5,f.23.22.1 75900,75901 1yp2A 451 39.21 b.81.1.4,c.68.1.6 123798,123799 2ogtA 498 40.34 3bmvA 683 40.63 1lzjA 292 42.38 c.68.1.9 74352 2dgkA 452 44.61 2hw2A 143 45.64 2pbkA 228 46.26 2o02A 230 48.06 2jejA 358 51.38 d.240.1.1,e.8.1.7 138284,138285 2j43A 219 51.93 1zx4A 192 52.58 1erjA 393 53.10 b.69.4.1 27660 1t1gA 364 53.40 c.41.1.2 106246 1s4iA 175 54.19 1o7qA 289 54.21 c.68.1.9 92626 1aocA 175 54.40 g.17.1.5 44817 2qneA 495 56.92 2ogrA 229 57.77 1uufA 369 57.81 b.35.1.2,c.2.1.1 100006,100007 1dpeA 507 59.70 c.94.1.1 35799 2p5zX 491 60.44 1uqwA 509 61.69 c.94.1.1 99799 2e0cA 409 62.65 1yb5A 351 62.80 b.35.1.2,c.2.1.1 116601,116602 1jvbA 347 63.40 b.35.1.2,c.2.1.1 77181,77182 1vkmA 297 64.20 c.138.1.1 108670 2v26A 784 65.65 1ftrA 296 65.88 d.58.33.1,d.58.33.1 39485,39486 2z07A 420 66.32 3bjuA 521 66.38 2b5eA 504 67.01 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1vkhA 273 67.13 c.69.1.32 108662 2ejwA 332 67.55 2pggA 774 67.59 1gytA 503 67.68 c.50.1.1,c.56.5.3 70765,70766 1i19A 561 67.72 d.58.32.3,d.145.1.1 61522,61523 2bg9A 370 68.36 1yqtA 538 68.57 2fbwB 252 68.76 2z20A 432 68.85 1n35A 1267 69.89 e.8.1.4 79935 1wdpA 495 71.03 c.1.8.1 120907 2pmbA 462 71.07 1q4gA 553 72.15 a.93.1.2,g.3.11.1 95789,95790 2go3A 267 73.86 d.14.1.7,d.14.1.7 135422,135423 2zf8A 278 75.84 1c3hA 137 77.06 b.22.1.1 90405 2j7nA 1022 77.51 2fs6A 137 77.70 b.60.1.2 134005 1c8uA 285 78.15 d.38.1.3,d.38.1.3 38547,38548 2v3uA 265 78.55 2r7eA 742 81.07 2bceA 585 81.80 c.69.1.1 34625 2bllA 345 82.21 c.2.1.2 128733 1aj2 282 83.38 2dvkA 188 84.68 1tjxA 159 85.13 b.7.1.2 112465 3d35A 388 86.26 1mrgA 263 86.44 d.165.1.1 42183 1xmzA 241 86.86 2c9jA 223 87.77 1q6uA 245 88.41 d.26.1.1 95998