# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o7qA 289 0.7700 c.68.1.9 92626 2icrA 237 1.097 1xmzA 241 1.244 2gw3A 225 1.573 2ogrA 229 1.647 2c9jA 223 1.939 2ib5A 233 2.350 2oszA 93 2.406 1qorA 327 2.453 b.35.1.2,c.2.1.1 24766,29782 2ie2A 222 2.624 2ds3A 761 2.751 2dddA 225 2.759 1lzjA 292 2.879 c.68.1.9 74352 1tt7A 330 4.168 b.35.1.2,c.2.1.1 112623,112624 2eihA 343 4.355 1yb5A 351 4.745 b.35.1.2,c.2.1.1 116601,116602 2hqkA 219 4.866 1wlyA 333 5.582 2p4mA 219 6.108 1zgoA 223 6.174 2qg3A 208 8.941 2dvkA 188 10.46 1f3vA 179 11.10 d.58.22.1 39382 1u3wA 374 11.92 b.35.1.2,c.2.1.1 113013,113014 2rh7A 239 11.97 2h5oA 234 12.46 1p0fA 373 12.79 b.35.1.2,c.2.1.1 87642,87643 1a3qA 285 13.11 b.1.18.1,b.2.5.3 21932,22447 4eugA 229 13.91 c.18.1.1 31019 2jhqA 226 14.41 1iq4A 179 14.45 d.77.1.1 62641 2hxmA 223 14.95 c.18.1.1 136857 2booA 247 16.38 1cnzA 363 17.28 c.77.1.1 35061 1fd9A 213 18.12 d.26.1.1 59771 2a0b 125 21.64 1y3tA 337 23.97 b.82.1.5 122600 1n8kA 374 24.25 b.35.1.2,c.2.1.1 80298,80299 1zvfA 176 24.59 1yhfA 115 24.63 b.82.1.9 123176 1vj0A 380 24.74 b.35.1.2,c.2.1.1 100786,100787 1fi4A 416 27.41 d.14.1.5,d.58.26.2 59847,59848 1q6hA 224 28.12 d.26.1.1 95975 2nrrA 159 29.17 1q6uA 245 29.19 d.26.1.1 95998 1hcnB 145 29.23 g.17.1.4 44810 1fngA 192 29.54 b.1.1.2,d.19.1.1 59904,59905 2cdcA 366 31.49 2zcwA 202 32.10 1b5qA 472 32.41 c.3.1.2,d.16.1.5 30404,37968 1tu1A 148 34.01 d.107.1.3 107316 2j9iA 421 38.81 1t5bA 201 40.66 c.23.5.3 106433 1gtmA 419 43.67 c.2.1.7,c.58.1.1 30223,33871 2bce 581 44.15 2iewA 363 45.04 2qywA 102 46.03 2jgoA 31 46.65 3cu0A 281 47.29 1f8fA 371 48.27 b.35.1.2,c.2.1.1 83246,83247 1bgpA 309 50.44 a.93.1.1 18690 1imtA 80 50.80 g.3.10.1,g.3.10.1 44201,44202 2j3hA 345 52.20 1s4iA 175 52.90 1yewA 382 53.22 2jhfA 374 53.63 b.35.1.2,c.2.1.1 138314,138315 2pw8I 65 54.51 1y71A 130 54.74 b.34.16.1 122677 2zc2A 78 55.41 2dq6A 870 57.09 2gsmB 262 57.10 b.6.1.2,f.17.2.1 135590,135591 2b0vA 153 59.10 d.113.1.1 127650 2p18A 311 59.30 2j41A 207 61.20 3cngA 189 61.89 3cx5F 146 63.33 2b5wA 357 64.15 2qjjA 402 64.27 1xqwA 293 67.12 1xtmA 175 68.80 2arpF 152 69.69 1ylhA 560 70.80 2gu3A 136 71.74 1dg9A 157 72.31 c.44.1.1 32637 1a0iA 348 72.63 b.40.4.6,d.142.2.1 25363,41577 2f1nA 262 73.12 d.151.1.1 132782 2vcyA 344 74.62 1aocA 175 74.80 g.17.1.5 44817 2vadA 223 74.97 2uxqA 402 76.26 1cosA 31 77.24 k.4.1.1 46405 2itmA 484 78.69 2olrA 540 79.27 c.91.1.1,c.109.1.1 139140,139141 2o95A 187 80.11 2g7bA 137 80.20 1z7bA 358 81.69 c.2.1.2 124599 2ogtA 498 83.95 1b3bA 415 86.07 c.2.1.7,c.58.1.1 30244,33892 2a7lA 136 86.42 d.20.1.1 126350 1yfuA 174 88.43 b.82.1.20 123094