# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zvfA	176	1.335		
2oszA	93	3.222		
2ds3A	761	3.254		
1ykhB	132	7.739	a.252.1.1	123519
1pytA	94	8.386	d.58.3.1	39064
2ns2A	242	9.202		
1pcaA	95	10.46	d.58.3.1	39063
3ezmA	101	11.31	b.89.1.1	28395
1tu1A	148	11.65	d.107.1.3	107316
1tt7A	330	12.72	b.35.1.2,c.2.1.1	112623,112624
3b82A	842	13.67		
2qg3A	208	14.82		
2ogrA	229	19.67		
2p1mA	163	20.47		
2c9jA	223	21.10		
1i4mA	108	22.03	d.6.1.1	66025
2arpF	152	23.83		
2eihA	343	25.17		
1yb5A	351	26.48	b.35.1.2,c.2.1.1	116601,116602
1z56A	246	31.49		
2a0b	125	32.69		
1yfuA	174	32.96	b.82.1.20	123094
1y71A	130	33.01	b.34.16.1	122677
1cmxA	236	33.08	d.3.1.6	37130
2e5yA	133	33.48		
1qorA	327	33.83	b.35.1.2,c.2.1.1	24766,29782
1xmzA	241	34.74		
1wlyA	333	36.10		
2dvyA	226	36.21		
2pv7A	298	40.20		
2dvkA	188	41.02		
1xgwA	176	42.62		
2j9iA	421	42.87		
2sqcA	631	44.27	a.102.4.2,a.102.4.2	18854,18855
2qdjA	304	46.00		
2gw3A	225	46.57		
1f3vA	179	48.33	d.58.22.1	39382
3cu0A	281	50.88		
1ppjF	110	51.04	f.27.1.1	104262
2icrA	237	51.49		
1dpbA	243	52.42	c.43.1.1	32618
1el6A	219	53.05	d.182.1.1	42606
2rioA	434	53.94		
2r8qA	359	54.61		
1au1A	166	55.77	a.26.1.3	16889
3d3iA	761	56.60		
2iewA	363	56.83		
3d82A	102	57.06		
2cfaA	217	58.16		
2nrrA	159	58.32		
2cp9A	64	58.46	a.5.2.2	130696
1knxA	312	61.58	c.98.2.1,c.91.1.2	77459,77460
1whnA	128	62.49	d.50.1.1	114648
2ex2A	458	63.56	e.3.1.3	132497
2ii3A	262	64.50		
1dfmA	223	65.23	c.52.1.5	33295
1x9mA	698	66.77	c.55.3.5,e.8.1.1	114999,115000
1m93A	55	68.41	e.1.1.1	91235
2re3A	194	70.06		
1sczA	233	70.17	c.43.1.1	98802
2ie2A	222	71.03		
2dddA	225	71.09		
2gicA	422	72.18	a.260.1.1	135227
2j66A	428	72.41		
2qe7H	135	72.42		
2ouwA	138	72.54		
2ek0A	90	74.00		
2fsuA	210	76.21		
3bv8A	87	76.26		
2ox6A	166	76.88		
3cx5F	146	77.55		
2oa4A	101	78.52		
2dm9A	198	83.63		
2bpdA	142	84.20		
2qvjA	421	84.78		
1vlbA	907	86.47	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
1upkA	341	86.59	a.118.1.15	99758
2hw2A	143	86.61		
2d4cA	256	87.27	a.238.1.1	131246
1whvA	100	87.53	d.58.7.1	114652
2pw8I	65	87.66		
2o95A	187	88.77