# List of top-scoring protein chains for T0500.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dplA	308	0.8899		
1f1cA	129	2.218	a.3.1.1	59569
1korA	400	2.515	c.26.2.1,d.210.1.1	72824,72825
1h29A	514	3.893	a.138.1.1	76546
2cvcA	545	3.998	a.138.1.1	130860
2z23A	517	15.12		
2e84A	556	19.10		
2dc0A	434	20.34		
1hxmB	242	21.30	b.1.1.1,b.1.1.2	61369,61370
2o2tA	117	23.54		
1bxsA	501	25.23	c.82.1.1	35357
1o9jA	501	30.00	c.82.1.1	86694
1mz4A	137	33.80	a.3.1.1	91496
1t3jA	96	35.55	h.4.16.1	106356
1w5cT	163	37.46	i.5.1.1	114227
1ezeA	38	39.23	j.39.1.1	46302
2b9bA	497	39.34		
1sfrA	304	42.80	c.69.1.3	105500
1k2yX	463	44.05	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
2fkmX	462	44.82	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	133660,133661,133662,133663
1lcsA	211	44.89	b.20.1.1	84580
1lluA	342	46.09	b.35.1.2,c.2.1.1	91064,91065
1p5dX	463	46.46	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
2h5aX	463	46.46	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	136141,136142,136143,136144
2fkfA	462	46.53	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	133653,133654,133655,133656
2ystA	119	47.10		
1p9hA	226	47.21	b.81.3.1	94389
2nz2A	413	49.99		
1nciA	110	50.06	b.1.6.1	22191
1w8xP	117	55.49	i.6.1.1	114392
3bm4A	210	66.77		
2dscA	212	66.89		
2dsbA	227	71.96		
1zvfA	176	74.11		
1z68A	719	74.75		
1yuyA	570	79.72		
1ofwA	296	82.01	a.138.1.1	92850
1tcaA	317	82.59	c.69.1.17	34726
1rm1B	122	83.73	a.32.1.1,b.56.1.1	118780,118781
1nh2D	121	84.75	a.32.1.1,b.56.1.1	91876,91877
1f2hA	169	84.81	d.58.22.1	59612
1yoeA	322	85.34		
2gj7E	401	87.89	b.1.1.1	135268
2qdjA	304	89.90