# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oszA 93 1.279 2p4mA 219 2.026 2j66A 428 2.269 2p6pA 384 2.542 1s58A 554 3.552 b.121.5.2 105262 2qg3A 208 4.059 1tt7A 330 4.091 b.35.1.2,c.2.1.1 112623,112624 1bkcI 256 4.316 d.92.1.10 40334 2eihA 343 4.537 1lzjA 292 5.373 c.68.1.9 74352 2c9jA 223 5.481 2nxcA 254 5.639 c.66.1.39 138739 1al21 302 7.187 1o7qA 289 7.418 c.68.1.9 92626 2ohxA 374 7.848 b.35.1.2,c.2.1.1 24669,29685 2dm6A 333 7.900 b.35.1.2,c.2.1.1 131567,131568 1wlyA 333 7.988 1vqoK 132 8.022 b.39.1.1 120372 1ar61 302 8.043 3cx5C 385 8.363 1ar71 302 8.805 1iojA 57 8.931 j.39.1.1 46293 1f8fA 371 9.048 b.35.1.2,c.2.1.1 83246,83247 1gk9B 557 11.08 2h0aA 276 12.46 2gw3A 225 13.41 2pw8I 65 15.04 2gicA 422 15.16 a.260.1.1 135227 1ppjC 379 15.46 f.32.1.1,f.21.1.2 104256,104257 1e3aB 560 16.64 1m2xA 223 17.00 d.157.1.1 84764 2vadA 223 19.34 1jd1A 129 19.57 d.79.1.1 62890 2ie2A 222 20.55 2nrrA 159 20.57 1zvfA 176 20.88 2arpA 116 22.72 g.17.1.2 127217 2hqkA 219 24.92 2jgoA 31 26.08 1kb9C 385 27.67 f.32.1.1,f.21.1.2 77315,77316 1ppjH 78 28.20 f.28.1.1 104264 1t0gA 109 29.30 d.120.1.2 99063 2rkhA 180 29.45 1n8kA 374 30.29 b.35.1.2,c.2.1.1 80298,80299 2h5oA 234 31.87 1t3jA 96 33.23 h.4.16.1 106356 3cjxA 165 33.31 1f3vA 179 35.24 d.58.22.1 39382 1u3wA 374 37.32 b.35.1.2,c.2.1.1 113013,113014 2qywA 102 37.73 1u2mA 143 38.29 f.48.1.1 107612 1cosA 31 40.00 k.4.1.1 46405 1e4cP 215 40.55 c.74.1.1 34969 1dvpA 220 40.99 a.118.9.2,g.50.1.1 19216,45358 1xa0A 328 42.00 b.35.1.2,c.2.1.1 115021,115022 2qfaC 47 43.10 2dmcA 116 43.59 b.1.18.10 131572 1zv1A 65 44.38 1tljA 213 44.52 d.282.1.1 107126 1msk 331 44.66 2j41A 207 46.42 2ba2A 85 46.58 h.1.30.1 128233 1u5pA 216 46.81 a.7.1.1,a.7.1.1 113046,113047 1pl8A 356 48.52 b.35.1.2,c.2.1.1 94878,94879 3cx5F 146 48.64 1uufA 369 48.81 b.35.1.2,c.2.1.1 100006,100007 1fx3A 169 49.80 d.33.1.1 38524 1zgoA 223 49.97 1h2bA 359 50.40 b.35.1.2,c.2.1.1 90543,90544 2h6oA 470 50.51 1in6A 334 50.67 a.4.5.11,c.37.1.20 62601,62602 1nk4A 580 51.73 c.55.3.5,e.8.1.1 91923,91924 1pvc1 301 52.10 1r1a1 287 52.90 1lm8V 160 53.47 b.3.3.1 74035 2dvkA 188 53.47 2booA 247 53.82 1u3dA 509 54.49 a.99.1.1,c.28.1.1 107638,107639 2clyA 214 55.31 2vcyA 344 55.98 1in4A 334 56.73 a.4.5.11,c.37.1.20 62597,62598 1io1A 398 57.12 e.32.1.1 62611 1w36C 1122 58.00 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2ox6A 166 60.47 2j3hA 345 62.07 2ywxA 157 63.27 2d5wA 603 64.09 1oftA 161 65.68 c.37.1.22 86968 2cxvA 219 66.99 b.47.1.4 131012 1pn2A 280 67.32 d.38.1.4,d.38.1.4 94930,94931 2bs2A 660 73.36 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1bjtA 793 77.56 e.11.1.1 43249 2cf5A 357 78.18 1t0hB 224 79.43 c.37.1.1 106208 1jvrA 137 79.67 a.61.1.2 18132 2ghtA 181 82.08 1d2nA 272 83.42 c.37.1.20 32428 2ouiA 360 83.59 3coqA 89 84.80 1xl3C 92 85.39 a.243.1.1 122104 1zu0A 529 85.91 2zf5O 497 86.46 1sy6A 204 88.15 b.1.1.4,b.1.1.4 106111,106112 1svfA 64 89.63 h.3.2.1 45763 2uxqA 402 89.68