# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p4mA 219 0.6003 2j66A 428 1.824 2hqkA 219 3.152 2oszA 93 3.516 2c9jA 223 3.805 2ohxA 374 4.501 b.35.1.2,c.2.1.1 24669,29685 2gw3A 225 4.852 2ie2A 222 5.409 1f8fA 371 7.104 b.35.1.2,c.2.1.1 83246,83247 1m2xA 223 7.437 d.157.1.1 84764 2uxqA 402 8.083 2vadA 223 8.256 1vqoK 132 10.52 b.39.1.1 120372 2eihA 343 10.60 2p6pA 384 10.66 1tt7A 330 10.76 b.35.1.2,c.2.1.1 112623,112624 1yewA 382 11.54 2h5oA 234 11.69 1bkcI 256 12.70 d.92.1.10 40334 1zgoA 223 12.79 1n8kA 374 12.80 b.35.1.2,c.2.1.1 80298,80299 1f3vA 179 13.06 d.58.22.1 39382 2qg3A 208 15.73 1qx4A 274 16.19 b.43.4.2,c.25.1.1 104624,104625 1cnzA 363 18.99 c.77.1.1 35061 2icrA 237 19.06 1zvfA 176 20.09 1lzjA 292 20.41 c.68.1.9 74352 2g7bA 137 21.32 2nxcA 254 21.38 c.66.1.39 138739 1wlyA 333 22.40 1u3wA 374 24.98 b.35.1.2,c.2.1.1 113013,113014 2ds3A 761 25.01 1lopA 164 25.32 b.62.1.1 27510 2oa2A 148 25.47 1o7qA 289 26.16 c.68.1.9 92626 2fs6A 137 26.30 b.60.1.2 134005 2gicA 422 26.76 a.260.1.1 135227 3cu0A 281 28.32 1ndh 272 29.86 2rh7A 239 33.77 2h0aA 276 34.79 2b0aA 186 35.07 c.8.8.1 127632 2i49A 429 36.70 2p5bA 352 37.27 1xa0A 328 38.64 b.35.1.2,c.2.1.1 115021,115022 1i7pA 274 38.84 b.43.4.2,c.25.1.1 66048,66049 3cx5C 385 40.58 2arpA 116 40.68 g.17.1.2 127217 2d8aA 348 41.57 1al21 302 42.11 1kwsA 261 43.00 c.68.1.7 73083 1ar71 302 43.17 1ar61 302 43.41 2h6oA 470 45.73 2fe7A 166 46.70 d.108.1.1 133325 2ogrA 229 48.29 2dm6A 333 52.11 b.35.1.2,c.2.1.1 131567,131568 2dvkA 188 53.99 1iojA 57 55.83 j.39.1.1 46293 1mrjA 247 56.26 d.165.1.1 42177 1p0fA 373 56.85 b.35.1.2,c.2.1.1 87642,87643 1jd1A 129 58.45 d.79.1.1 62890 1gu7A 364 58.95 b.35.1.2,c.2.1.1 83321,83322 2qywA 102 60.81 2a46A 238 62.23 2pw8I 65 63.25 2hvqA 335 64.64 2booA 247 64.67 1t0gA 109 65.35 d.120.1.2 99063 2dvyA 226 66.82 1h2bA 359 68.40 b.35.1.2,c.2.1.1 90543,90544 2jgoA 31 68.65 1juhA 350 70.75 b.82.1.5 71884 1g8kB 133 70.80 b.33.1.1 24435 1kwfA 363 72.08 a.102.1.2 73078 2ba2A 85 72.34 h.1.30.1 128233 1s58A 554 72.71 b.121.5.2 105262 1umkA 275 74.56 b.43.4.2,c.25.1.1 113312,113313 2cbiA 594 74.79 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 2jhfA 374 75.47 b.35.1.2,c.2.1.1 138314,138315 2cqsA 842 76.97 2bs2A 660 77.48 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2nrrA 159 78.99 2v7kA 361 83.34 3cjxA 165 83.54 1tljA 213 84.44 d.282.1.1 107126 2cxvA 219 84.59 b.47.1.4 131012