Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1v38A	1.4069e-04	1v38A/T0500-1v38A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b4fA	1.9017e-04	1b4fA/T0500-1b4fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b0xA	3.1403e-04	1b0xA/T0500-1b0xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2f3nA	1.1930e-02	2f3nA/T0500-2f3nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2e8oA	2.1297e-01	2e8oA/T0500-2e8oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ow5A	2.1173e+00	1ow5A/T0500-1ow5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
3bs5B	2.6297e+00	3bs5B/T0500-3bs5B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs7A	4.0936e+00	3bs7A/T0500-3bs7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs5A	4.3589e+00	3bs5A/T0500-3bs5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d3dA	8.5906e+00	2d3dA/T0500-2d3dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oxjA	2.5746e+01	1oxjA/T0500-1oxjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2 a.118.1.13
1kw4A	2.8930e+01	1kw4A/T0500-1kw4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2jgoA	3.1328e+01	2jgoA/T0500-2jgoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a4nA	3.1650e+01	2a4nA/T0500-2a4nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
2ozgA	3.2050e+01	2ozgA/T0500-2ozgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s3zA	3.4855e+01	1s3zA/T0500-1s3zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
1cokA	3.6221e+01	1cokA/T0500-1cokA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1zjaA	3.8395e+01	1zjaA/T0500-1zjaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hv2A	3.8992e+01	2hv2A/T0500-2hv2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i00A	3.9513e+01	2i00A/T0500-2i00A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001