Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1v38A	3.5006e-09	1v38A/T0500-1v38A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b4fA	1.2628e-08	1b4fA/T0500-1b4fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b0xA	1.9485e-08	1b0xA/T0500-1b0xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2f3nA	2.4738e-08	2f3nA/T0500-2f3nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1ow5A	1.1951e-07	1ow5A/T0500-1ow5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2e8oA	4.4356e-06	2e8oA/T0500-2e8oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs5B	2.6767e-05	3bs5B/T0500-3bs5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d3dA	1.3499e-02	2d3dA/T0500-2d3dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kw4A	1.3722e-02	1kw4A/T0500-1kw4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
3bs5A	1.3786e-02	3bs5A/T0500-3bs5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oxjA	1.6444e-02	1oxjA/T0500-1oxjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2 a.118.1.13
3bs7A	4.7794e-02	3bs7A/T0500-3bs7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cokA	1.9672e-01	1cokA/T0500-1cokA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1dxsA	2.9429e-01	1dxsA/T0500-1dxsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1pk1B	3.4969e-01	1pk1B/T0500-1pk1B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2dkyA	1.4660e+01	2dkyA/T0500-2dkyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1aq6A	1.7119e+01	1aq6A/T0500-1aq6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.108.1.1
2qg3A	1.7787e+01	2qg3A/T0500-2qg3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f48A	2.2433e+01	2f48A/T0500-2f48A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.89.1.1
2fjcA	2.2677e+01	2fjcA/T0500-2fjcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.25.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001