# List of top-scoring protein chains for T0500.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2eaoA 99 1.66e-07 1sggA 75 1.62e-06 a.60.1.2 17943 2qkqA 83 2.31e-06 2eamA 80 3.67e-06 1b4fA 82 2.45e-05 a.60.1.2 17934 1ucvA 81 2.82e-05 a.60.1.2 99191 2dl0A 97 0.000198 1b0xA 94 0.000217 a.60.1.2 17933 2e8nA 88 0.000220 3bq7A 81 0.005092 1x40A 91 0.02227 a.60.1.2 121675 1oxjA 173 0.03969 a.60.1.2,a.118.1.13 87517,87518 2f3nA 76 0.04135 a.60.1.2 132885 3bs5B 80 0.09224 2eanA 83 0.09238 1dxsA 80 0.2978 a.60.1.2 17944 1cokA 68 0.3830 a.60.1.2 17945 1ji4A 144 0.5306 a.25.1.1 77117 1v38A 78 0.6027 a.60.1.2 100280 2p0uA 413 1.152 1shzC 233 1.222 1x10A 208 1.425 1pznA 349 3.052 a.60.4.1,c.37.1.11 95456,95457 1iapA 211 3.099 a.91.1.1 62119 1z8tA 208 3.273 1z8wA 208 3.491 1z8xA 208 3.918 1x12A 208 4.252 2o4cA 380 4.415 1ioiA 208 4.586 c.56.4.1 62629 1pwuA 776 5.310 d.92.1.14,d.92.1.14,d.166.1.1 95244,95245,95246 1iofA 208 6.524 c.56.4.1 62625 1j7nA 776 6.632 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2esgA 475 8.165 2df5A 213 8.677 1r70B 462 8.689 1fiuA 286 9.121 c.52.1.10 33317 1lluA 342 9.675 b.35.1.2,c.2.1.1 91064,91065 2fug3 783 9.99 3c61A 314 11.93 3b96A 587 12.07 1a2zA 220 12.92 c.56.4.1 33794 2eo8A 208 13.35 1gsoA 431 17.49 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 4sbvA 260 17.52 b.121.4.7 23299 2j5dA 45 19.82 2oqkA 117 20.67 1bp0A 316 22.49 d.117.1.1 40993 1tsxA 316 23.75 d.117.1.1 41002 2qknA 516 23.81 1bo8A 316 24.52 d.117.1.1 40994 3cigA 697 24.74 2p5zX 491 25.33 2qpmA 516 25.58 1tsyA 316 27.84 d.117.1.1 40990 1w1oA 534 28.28 d.58.32.4,d.145.1.1 109071,109072 2f1jA 322 28.72 a.60.4.1,c.37.1.11 132770,132771 1jmfA 316 29.33 d.117.1.1 41007 2fafA 608 30.11 2i1qA 322 30.41 a.60.4.1,c.37.1.11 136984,136985 1bp6A 316 30.65 d.117.1.1 41000 2g89A 316 31.89 1w5tA 412 32.00 a.4.5.11,c.37.1.20 114255,114256 2fe9A 86 32.36 2uxwA 607 33.93 2d3dA 88 34.17 3c9wA 357 34.98 1jmiA 316 35.13 d.117.1.1 41006 1bpjA 316 35.15 d.117.1.1 40996 1tdbA 315 36.52 d.117.1.1 41025 1njeA 316 37.40 d.117.1.1 41001 2g8dA 316 37.69 2cw6A 298 38.02 1pmsA 136 38.08 b.55.1.1 26966 2g86A 316 38.71 1gff1 426 38.83 1o0xA 262 39.93 d.127.1.1 80755 2g8aA 316 40.33 1mdbA 539 41.01 e.23.1.1 79008 2bl0B 145 42.60 2nn6D 237 44.77 1vzaA 316 46.14 d.117.1.1 41017 1tswA 316 46.34 d.117.1.1 40991 1wx8A 96 47.92 d.15.1.1 121393 1njdA 316 49.00 d.117.1.1 41004 2erkA 365 49.29 d.144.1.7 41655 2eh6A 375 49.33 3erkA 364 49.88 d.144.1.7 41654 1rqfA 184 49.93 g.41.4.1 111914 1qf8A 182 50.26 g.41.4.1 45212 2gphA 364 50.67 2mtaH 373 51.34 b.69.2.1 27636 1vzeA 316 51.47 d.117.1.1 41003 1bo7A 316 51.76 d.117.1.1 40997 2bbkH 355 53.01 b.69.2.1 27634 2gc7A 386 53.65 b.69.2.1 134954 1yxaA 398 55.48 1wwvA 91 55.60 a.60.1.2 121378 2o2iA 300 58.93 2yw2A 424 59.51 1jmgA 316 59.98 d.117.1.1 41008 1jmhA 316 60.42 d.117.1.1 41009 1b7bA 310 60.49 c.73.1.1 34963 1mg2A 390 61.44 b.69.2.1 79059 1w36C 1122 63.71 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1tvvA 316 65.12 d.117.1.1 40998 2nnuA 205 65.17 b.91.1.1 138401 1sj7A 174 65.19 a.215.1.1 105603 2h80A 81 65.46 1kg4A 225 66.33 a.96.1.2 77380 2ia0A 171 69.21 2b6gA 119 69.42 1tvoA 368 71.62 1v3wA 173 73.02 b.81.1.5 100291 1wa8B 95 75.22 a.25.3.1 120810 1kg6A 225 75.66 a.96.1.2 77382 1ym5A 300 76.16 2qvbA 297 76.68 1x9xA 68 77.51 a.60.1.2 121829 1xcrA 316 77.96 d.290.1.2 121860 1ovzA 207 78.12 b.1.1.4,b.1.1.4 87473,87474 2o27A 145 78.37 2ol1A 147 80.98 2hjrA 328 81.33 1znwA 207 82.73 c.37.1.1 125412 2es6A 101 82.96 1w36B 1180 85.68 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124