# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.06e-09 a.60.1.2 100280 2f3nA 76 3.96e-09 a.60.1.2 132885 1b4fA 82 2.61e-08 a.60.1.2 17934 1b0xA 94 4.03e-08 a.60.1.2 17933 1ow5A 85 9.54e-08 a.60.1.2 93630 2e8oA 103 2.40e-06 3bs5B 80 6.19e-05 1oxjA 173 0.004838 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.005410 a.60.1.2 73077 2d3dA 88 0.03110 3bs5A 106 0.06392 3bs7A 78 0.07039 1dxsA 80 0.07301 a.60.1.2 17944 1cokA 68 0.08222 a.60.1.2 17945 1pk1B 89 0.1830 a.60.1.2 118712 2fdrA 229 2.882 c.108.1.6 133319 1aq6A 253 3.077 c.108.1.1 43331 2fjcA 156 4.727 a.25.1.1 133559 2cprA 124 5.305 a.60.8.4 130705 1uqvA 85 5.410 a.60.1.2 99798 1q06A 135 5.593 a.6.1.3 95493 1y7tA 327 5.613 c.2.1.5,d.162.1.1 122718,122719 2rflA 173 5.791 2ekgA 327 6.516 1t2dA 322 6.585 c.2.1.5,d.162.1.1 99084,99085 3mdeA 385 7.357 a.29.3.1,e.6.1.1 16594,42855 2dkyA 91 7.792 1kmiZ 214 9.264 h.4.11.1 72752 2jbrA 422 9.394 1o6aA 96 9.466 b.139.1.1 92562 2yysA 286 9.714 1ou8A 111 10.01 b.136.1.1 93543 2qg3A 208 10.49 2c41A 158 10.55 1r7mA 235 10.77 d.95.2.1,d.95.2.1 111713,111714 1ji4A 144 10.88 a.25.1.1 77117 2jgoA 31 10.91 2v7pA 310 11.48 2d5kA 156 12.54 2z90A 161 12.70 3b5nC 70 12.78 1jqiA 388 14.17 a.29.3.1,e.6.1.1 67087,67088 1ox8A 107 14.21 b.136.1.1 93671 1wm1A 317 14.38 c.69.1.7 109405 2vigA 391 14.46 1qtrA 317 14.59 c.69.1.7 34660 1oxnA 140 14.94 g.52.1.1 93704 1y9bA 90 15.24 a.43.1.9 122777 2f48A 555 15.66 c.89.1.1 132915 2phjA 251 17.56 2d29A 387 19.38 a.29.3.1,e.6.1.1 131157,131158 1rovA 857 19.50 a.119.1.1,b.12.1.1 97674,97675 1ehyA 294 19.53 c.69.1.11 34693 2pfkA 320 19.93 c.89.1.1 35577 1amoA 615 20.13 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2h5gA 463 20.40 1azwA 313 21.79 c.69.1.7 34658 2pw4A 188 22.36 2dxnA 274 22.90 1cosA 31 23.13 k.4.1.1 46405 3cs3A 277 24.29 1zkdA 387 26.13 c.66.1.52 125184 1iz7A 295 26.60 c.69.1.8 76982 1vr3A 191 26.75 b.82.1.6 120431 3mddA 385 26.99 a.29.3.1,e.6.1.1 16592,42853 1jmsA 381 27.95 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1iirA 415 28.78 c.87.1.5 62453 1swvA 267 29.69 c.108.1.3 112134 1v2dA 381 30.68 c.67.1.1 108281 2zf5O 497 30.87 1broA 277 31.50 c.69.1.12 34700 1t6sA 162 32.18 a.4.5.60,a.4.5.60 112271,112272 1cx8B 639 33.20 a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 1ceqA 316 33.71 c.2.1.5,d.162.1.1 30163,42130 1j0fA 100 33.80 c.47.1.14 90739 1bdmA 327 34.38 c.2.1.5,d.162.1.1 30137,42104 1uouA 474 34.76 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2dvkA 188 36.77 3bfvA 271 36.79 2ek5A 129 36.99 2pg0A 385 37.33 2c6cA 707 37.47 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1zuaX 317 37.48 1z4eA 153 37.58 d.108.1.1 124431 2hd9A 145 39.87 6ldhA 329 40.04 c.2.1.5,d.162.1.1 30161,42128 1bmdA 327 40.43 c.2.1.5,d.162.1.1 30139,42106 1b8pA 329 40.77 c.2.1.5,d.162.1.1 30147,42114 2fziA 206 41.21 c.71.1.1 134448 1sflA 238 41.75 c.1.10.1 112077 2rhwA 283 42.28 2cklA 108 42.35 2hdoA 209 42.38 c.108.1.6 136345 1ldg 316 44.92 1eysC 382 45.58 a.138.1.2 19678 1a8qA 274 45.95 c.69.1.12 34702 1ez3A 127 48.26 a.47.2.1 17768 1brt 277 49.43 1pud 386 49.60 1imjA 210 49.74 c.69.1.23 71246 3d2lA 243 49.93 1zxxA 319 50.29 1gutA 68 54.72 b.40.6.1 65576 1u9lA 70 55.59 a.60.4.2 107751 1knxA 312 57.79 c.98.2.1,c.91.1.2 77459,77460 2c2uA 207 58.02 1ur5A 309 59.55 c.2.1.5,d.162.1.1 99807,99808 1dwkA 156 60.60 a.35.1.4,d.72.1.1 17075,39606 1bn6A 294 61.02 c.69.1.8 34678 1fntc 245 61.38 2pujA 286 61.46 1b22A 114 61.66 a.60.4.1 17969 1qaxA 428 62.07 d.58.20.1,d.179.1.1 39376,42597 1uxjA 309 62.45 c.2.1.5,d.162.1.1 108112,108113 2bhwA 232 62.66 1va4A 279 63.67 c.69.1.12 108458 1vj7A 393 65.66 a.211.1.1,d.218.1.8 100801,100802 2csgA 424 65.84 b.82.2.12 130768 2i33A 258 66.33 1a8sA 273 66.55 c.69.1.12 34710 1ojqA 212 67.32 d.166.1.1 93146 1x4rA 99 67.76 1ve9A 347 68.11 c.4.1.2,d.16.1.3 100571,100572 1pzgA 331 68.87 c.2.1.5,d.162.1.1 95425,95426 2gr8A 99 69.08 d.24.1.4 135522 1s3zA 165 69.88 d.108.1.1 105250 2ootA 709 70.07 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2go7A 207 70.47 c.108.1.6 135434 2hujA 140 71.96 a.24.26.1 136777 1qo7A 394 72.23 c.69.1.11 34697 1qsoA 149 72.23 d.108.1.1 40812 2z2iA 191 72.38 1hyhA 309 72.69 c.2.1.5,d.162.1.1 30150,42117 2pibA 216 73.13 2puhA 286 74.31 1r3dA 264 74.92 c.69.1.35 111680 1hzmA 154 77.46 c.46.1.1 65975 1rxdA 159 79.63 c.45.1.1 111959 1cqwA 295 80.06 c.69.1.8 34679 2i6tA 303 81.44 2hlvA 160 82.34 2q83A 346 83.26 2dgdA 223 83.96 104lA 166 84.33 d.2.1.3 36969 1uujA 88 87.73 a.221.1.1 108046 1w77A 228 88.59 c.68.1.13 120679 2z1qA 577 88.66 2bh9A 489 89.96