# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.25e-09 a.60.1.2 100280 2f3nA 76 1.56e-09 a.60.1.2 132885 1b4fA 82 1.65e-08 a.60.1.2 17934 1b0xA 94 2.58e-08 a.60.1.2 17933 1ow5A 85 2.00e-07 a.60.1.2 93630 2e8oA 103 1.46e-06 3bs5B 80 3.39e-05 1kw4A 89 0.005541 a.60.1.2 73077 1oxjA 173 0.009770 a.60.1.2,a.118.1.13 87517,87518 2d3dA 88 0.03461 3bs5A 106 0.04804 3bs7A 78 0.04959 1cokA 68 0.1114 a.60.1.2 17945 1dxsA 80 0.1775 a.60.1.2 17944 1pk1B 89 0.2412 a.60.1.2 118712 1q06A 135 2.719 a.6.1.3 95493 1aq6A 253 3.777 c.108.1.1 43331 2fdrA 229 4.295 c.108.1.6 133319 1rovA 857 4.654 a.119.1.1,b.12.1.1 97674,97675 2qg3A 208 5.231 2cprA 124 6.776 a.60.8.4 130705 2rflA 173 7.544 2jgoA 31 7.834 2fjcA 156 8.151 a.25.1.1 133559 1y7tA 327 8.888 c.2.1.5,d.162.1.1 122718,122719 1kmiZ 214 9.223 h.4.11.1 72752 1t2dA 322 9.451 c.2.1.5,d.162.1.1 99084,99085 1ou8A 111 10.09 b.136.1.1 93543 1y9bA 90 10.34 a.43.1.9 122777 1knxA 312 10.91 c.98.2.1,c.91.1.2 77459,77460 2dkyA 91 11.72 2vofA 157 11.73 2phjA 251 12.27 2z90A 161 13.26 2jbrA 422 13.31 2dvkA 188 14.63 3b5nC 70 15.65 1ox8A 107 15.71 b.136.1.1 93671 2vm6A 150 15.82 1cosA 31 15.89 k.4.1.1 46405 2v7pA 310 16.00 2d29A 387 16.39 a.29.3.1,e.6.1.1 131157,131158 2vigA 391 16.41 2f48A 555 16.46 c.89.1.1 132915 1ji4A 144 17.94 a.25.1.1 77117 2d5kA 156 18.19 2yysA 286 18.26 1z4eA 153 18.46 d.108.1.1 124431 1jqiA 388 18.63 a.29.3.1,e.6.1.1 67087,67088 1uqvA 85 19.13 a.60.1.2 99798 1azwA 313 19.38 c.69.1.7 34658 2dxnA 274 19.41 2fziA 206 20.03 c.71.1.1 134448 1r7mA 235 21.01 d.95.2.1,d.95.2.1 111713,111714 3mdeA 385 21.12 a.29.3.1,e.6.1.1 16594,42855 1yge 839 21.48 2pfkA 320 24.29 c.89.1.1 35577 1qtrA 317 24.69 c.69.1.7 34660 2hd9A 145 24.76 3cs3A 277 26.55 1jmsA 381 27.58 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1qsoA 149 27.99 d.108.1.1 40812 2c41A 158 28.14 1ez3A 127 28.30 a.47.2.1 17768 1imjA 210 29.53 c.69.1.23 71246 2pw4A 188 29.58 1wm1A 317 29.83 c.69.1.7 109405 1ehyA 294 29.97 c.69.1.11 34693 1j0fA 100 30.37 c.47.1.14 90739 3b85A 208 31.87 2fiaA 162 34.93 d.108.1.1 133514 1v2dA 381 36.32 c.67.1.1 108281 1zxxA 319 36.35 2hdoA 209 37.05 c.108.1.6 136345 1qo7A 394 37.48 c.69.1.11 34697 1sflA 238 37.54 c.1.10.1 112077 2zf5O 497 38.54 1s3zA 165 39.22 d.108.1.1 105250 1iz7A 295 40.19 c.69.1.8 76982 2h5gA 463 40.27 3bfvA 271 40.79 1vr3A 191 40.81 b.82.1.6 120431 1amoA 615 40.97 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1iirA 415 41.23 c.87.1.5 62453 1kcwA 1046 42.03 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1ux6A 350 42.67 b.29.1.16,g.75.1.1 100145,100146 1t6sA 162 43.55 a.4.5.60,a.4.5.60 112271,112272 2pg0A 385 43.99 2a6cA 83 44.40 a.35.1.13 126236 1gutA 68 45.14 b.40.6.1 65576 2h6oA 470 48.53 2f6uA 234 49.14 c.1.4.1 133061 2csgA 424 49.21 b.82.2.12 130768 2bh9A 489 49.25 1ceqA 316 50.85 c.2.1.5,d.162.1.1 30163,42130 1i12A 160 51.05 d.108.1.1 61515 1ads 315 51.35 1ojqA 212 52.51 d.166.1.1 93146 1i21A 159 52.59 d.108.1.1 61549 2vgxA 148 53.12 2z2iA 191 54.97 2hujA 140 56.17 a.24.26.1 136777 2hazA 105 56.66 b.1.2.1 136303 2c2uA 207 58.93 2fp7A 54 59.76 1w77A 228 60.46 c.68.1.13 120679 1cs8A 316 61.16 d.3.1.1 37065 1uouA 474 61.65 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1t4oA 117 62.19 d.50.1.1 106425 1qaxA 428 62.65 d.58.20.1,d.179.1.1 39376,42597 1sfjA 238 62.75 c.1.10.1 112075 1od5A 492 63.68 b.82.1.2,b.82.1.2 86832,86833 2jf2A 264 65.10 b.81.1.1 138289 2i33A 258 65.43 1oxnA 140 65.44 g.52.1.1 93704 1hzmA 154 65.51 c.46.1.1 65975 1a2zA 220 65.91 c.56.4.1 33794 2c2jA 211 66.78 2pthA 193 70.65 c.56.3.1 33793 2cklA 108 71.44 1bdmA 327 71.72 c.2.1.5,d.162.1.1 30137,42104 2oszA 93 71.88 1fjgD 209 72.01 d.66.1.2 39553 1ldg 316 72.10 2uwgA 171 72.10 2q83A 346 73.37 1h7cA 108 74.36 a.7.5.1 70914 1b8pA 329 75.60 c.2.1.5,d.162.1.1 30147,42114 1zr6A 503 77.26 1r88A 280 77.84 c.69.1.3 97219 1o0pA 104 78.30 d.58.7.1 86535 1cx8B 639 79.63 a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 2sli 679 81.73 1hnjA 317 81.81 c.95.1.2,c.95.1.2 35969,35970 2ek5A 129 84.08 1iu8A 206 84.45 c.56.4.1 71436 1pud 386 85.27 1izcA 339 85.31 c.1.12.5 83838 3mddA 385 85.39 a.29.3.1,e.6.1.1 16592,42853 3c70A 257 86.57 1uujA 88 87.45 a.221.1.1 108046 1jetA 517 89.74 c.94.1.1 35718