# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 9.54e-10 a.60.1.2 100280 2f3nA 76 3.58e-09 a.60.1.2 132885 1b4fA 82 2.70e-08 a.60.1.2 17934 1b0xA 94 3.51e-08 a.60.1.2 17933 1ow5A 85 9.94e-08 a.60.1.2 93630 2e8oA 103 7.48e-06 3bs5B 80 0.000227 1kw4A 89 0.008906 a.60.1.2 73077 1oxjA 173 0.02458 a.60.1.2,a.118.1.13 87517,87518 1dxsA 80 0.08420 a.60.1.2 17944 1cokA 68 0.1211 a.60.1.2 17945 3bs5A 106 0.1396 2d3dA 88 0.1831 3bs7A 78 0.1873 1pk1B 89 0.4671 a.60.1.2 118712 2qg3A 208 1.843 2fjcA 156 2.035 a.25.1.1 133559 1ji4A 144 2.579 a.25.1.1 77117 2rflA 173 3.175 1q06A 135 4.139 a.6.1.3 95493 1t2dA 322 4.281 c.2.1.5,d.162.1.1 99084,99085 2ekgA 327 4.899 2fdrA 229 5.110 c.108.1.6 133319 2c41A 158 5.859 2d5kA 156 6.115 1a2zA 220 6.634 c.56.4.1 33794 2cprA 124 6.846 a.60.8.4 130705 1rovA 857 7.273 a.119.1.1,b.12.1.1 97674,97675 3mdeA 385 7.385 a.29.3.1,e.6.1.1 16594,42855 1iu8A 206 7.412 c.56.4.1 71436 1kmiZ 214 8.025 h.4.11.1 72752 2zf5O 497 8.362 2jgoA 31 8.501 3b5nC 70 8.912 1o6aA 96 9.317 b.139.1.1 92562 1y7tA 327 9.595 c.2.1.5,d.162.1.1 122718,122719 1y9bA 90 10.82 a.43.1.9 122777 1aq6A 253 11.34 c.108.1.1 43331 2f48A 555 11.39 c.89.1.1 132915 2v7pA 310 11.66 2vigA 391 11.74 2phjA 251 11.88 2dkyA 91 11.90 2z90A 161 11.90 1jqiA 388 12.41 a.29.3.1,e.6.1.1 67087,67088 1xdyA 298 12.60 d.176.1.1 115186 1iirA 415 13.97 c.87.1.5 62453 1r7mA 235 15.76 d.95.2.1,d.95.2.1 111713,111714 1j0fA 100 15.87 c.47.1.14 90739 1ez3A 127 16.47 a.47.2.1 17768 2gr8A 99 16.51 d.24.1.4 135522 2pytA 133 16.95 2c2uA 207 18.80 1uqvA 85 18.99 a.60.1.2 99798 1ou8A 111 20.67 b.136.1.1 93543 1amoA 615 23.40 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 3mddA 385 23.76 a.29.3.1,e.6.1.1 16592,42853 1dgwA 178 24.23 b.82.1.2 28090 1cosA 31 24.33 k.4.1.1 46405 1oxnA 140 25.72 g.52.1.1 93704 2d29A 387 26.97 a.29.3.1,e.6.1.1 131157,131158 1sflA 238 27.11 c.1.10.1 112077 3cs3A 277 27.94 1t6sA 162 28.41 a.4.5.60,a.4.5.60 112271,112272 1vrbA 342 29.61 b.82.2.11 120450 1ceqA 316 29.68 c.2.1.5,d.162.1.1 30163,42130 2h5gA 463 30.24 1lmlA 478 31.10 d.92.1.3 40295 2jbrA 422 33.60 1ldg 316 33.98 2yysA 286 34.23 1ox8A 107 35.73 b.136.1.1 93671 6ldhA 329 35.78 c.2.1.5,d.162.1.1 30161,42128 1z4eA 153 36.10 d.108.1.1 124431 2hazA 105 36.25 b.1.2.1 136303 1broA 277 37.64 c.69.1.12 34700 1kcwA 1046 37.83 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1o9rA 162 38.26 a.25.1.1 86706 3bfvA 271 38.26 2ootA 709 39.31 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1wm1A 317 40.72 c.69.1.7 109405 1s3zA 165 41.68 d.108.1.1 105250 2fziA 206 41.68 c.71.1.1 134448 2dvkA 188 43.69 2i6tA 303 43.74 2csgA 424 43.82 b.82.2.12 130768 1ur5A 309 45.47 c.2.1.5,d.162.1.1 99807,99808 2ek5A 129 45.94 1hzmA 154 46.15 c.46.1.1 65975 1xl4A 301 46.80 b.1.18.16,f.14.1.1 115430,115431 2r6hA 290 47.36 2vphA 100 47.51 2c6cA 707 47.63 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2z1qA 577 48.10 1qtrA 317 48.10 c.69.1.7 34660 1od5A 492 49.38 b.82.1.2,b.82.1.2 86832,86833 1vr3A 191 49.80 b.82.1.6 120431 2q83A 346 49.90 1i12A 160 50.50 d.108.1.1 61515 1w77A 228 51.98 c.68.1.13 120679 2vgxA 148 52.39 2pg0A 385 52.84 2c2jA 211 53.93 1eysC 382 54.39 a.138.1.2 19678 1zkdA 387 58.10 c.66.1.52 125184 1pzgA 331 59.01 c.2.1.5,d.162.1.1 95425,95426 2vm6A 150 59.69 1v2dA 381 60.07 c.67.1.1 108281 1zr6A 503 60.25 1ux6A 350 60.78 b.29.1.16,g.75.1.1 100145,100146 2pfkA 320 61.97 c.89.1.1 35577 2i0kA 561 62.34 1hyhA 309 62.68 c.2.1.5,d.162.1.1 30150,42117 1fnf 368 64.43 1izcA 339 65.79 c.1.12.5 83838 2pthA 193 66.35 c.56.3.1 33793 1crxA 322 67.94 a.60.9.1,d.163.1.1 18097,42157 1iz7A 295 68.14 c.69.1.8 76982 1jigA 146 69.09 a.25.1.1 71685 1azwA 313 69.81 c.69.1.7 34658 1sfjA 238 70.40 c.1.10.1 112075 2hlvA 160 70.80 2z2iA 191 71.83 1uxjA 309 72.00 c.2.1.5,d.162.1.1 108112,108113 2jf2A 264 73.45 b.81.1.1 138289 1gutA 68 73.49 b.40.6.1 65576 2hd9A 145 73.51 2vofA 157 73.69 2d4wA 504 76.15 1mpxA 615 77.16 b.18.1.13,c.69.1.21 85041,85042 1brt 277 77.62 1dpeA 507 78.30 c.94.1.1 35799 1h7cA 108 79.66 a.7.5.1 70914 2uwgA 171 81.10 1uouA 474 81.25 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1qcxA 359 81.38 b.80.1.2 28028 2fug7 129 81.55 1htwA 158 81.65 c.37.1.18 71083 2fp7A 54 81.67 2hujA 140 82.14 a.24.26.1 136777 1csbB 205 82.69 1gd2G 70 84.25 h.1.3.1 45530 2f4qA 346 84.79 3d2lA 243 85.22 1yge 839 85.82 2az4A 429 85.92 d.157.1.10 127597 1ehyA 294 86.98 c.69.1.11 34693 2fiaA 162 87.17 d.108.1.1 133514 1t4oA 117 87.20 d.50.1.1 106425 1a4eA 488 88.49 e.5.1.1 42806 1cqwA 295 88.61 c.69.1.8 34679 1bdmA 327 89.75 c.2.1.5,d.162.1.1 30137,42104