# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.88e-09 a.60.1.2 100280 2f3nA 76 7.51e-09 a.60.1.2 132885 1b4fA 82 4.84e-08 a.60.1.2 17934 1b0xA 94 5.91e-08 a.60.1.2 17933 1ow5A 85 1.81e-07 a.60.1.2 93630 2e8oA 103 1.07e-05 3bs5B 80 0.000216 1oxjA 173 0.009192 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.02865 a.60.1.2 73077 1dxsA 80 0.08999 a.60.1.2 17944 3bs5A 106 0.1177 2d3dA 88 0.1307 3bs7A 78 0.1364 1cokA 68 0.1511 a.60.1.2 17945 1pk1B 89 0.6283 a.60.1.2 118712 2fjcA 156 3.840 a.25.1.1 133559 2rflA 173 4.958 1ji4A 144 5.480 a.25.1.1 77117 2f48A 555 5.728 c.89.1.1 132915 1aq6A 253 5.730 c.108.1.1 43331 2ekgA 327 5.915 3mdeA 385 6.106 a.29.3.1,e.6.1.1 16594,42855 2qg3A 208 6.521 2fdrA 229 7.213 c.108.1.6 133319 2vigA 391 7.349 1q06A 135 7.723 a.6.1.3 95493 1iirA 415 8.558 c.87.1.5 62453 1t2dA 322 8.715 c.2.1.5,d.162.1.1 99084,99085 1jqiA 388 9.680 a.29.3.1,e.6.1.1 67087,67088 1kmiZ 214 9.813 h.4.11.1 72752 1y9bA 90 9.937 a.43.1.9 122777 1iu8A 206 10.52 c.56.4.1 71436 3b5nC 70 10.57 2cprA 124 10.72 a.60.8.4 130705 1y7tA 327 12.02 c.2.1.5,d.162.1.1 122718,122719 2c41A 158 12.26 1amoA 615 12.34 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2pytA 133 12.39 2dkyA 91 12.46 2jbrA 422 12.48 2d5kA 156 12.68 1uqvA 85 13.30 a.60.1.2 99798 1rovA 857 13.73 a.119.1.1,b.12.1.1 97674,97675 2jgoA 31 15.22 1j0fA 100 15.97 c.47.1.14 90739 1xdyA 298 17.53 d.176.1.1 115186 1sflA 238 17.75 c.1.10.1 112077 1a2zA 220 17.82 c.56.4.1 33794 2zf5O 497 19.04 2d29A 387 19.18 a.29.3.1,e.6.1.1 131157,131158 1o6aA 96 19.25 b.139.1.1 92562 3mddA 385 20.34 a.29.3.1,e.6.1.1 16592,42853 2v7pA 310 20.74 2h5gA 463 20.87 1ou8A 111 21.03 b.136.1.1 93543 1oxnA 140 21.56 g.52.1.1 93704 2gr8A 99 22.54 d.24.1.4 135522 2z1qA 577 23.31 1cosA 31 24.16 k.4.1.1 46405 2z90A 161 24.96 1wm1A 317 25.37 c.69.1.7 109405 2yysA 286 25.78 1ez3A 127 26.04 a.47.2.1 17768 2i33A 258 26.19 1uouA 474 26.88 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1r7mA 235 27.17 d.95.2.1,d.95.2.1 111713,111714 1hzmA 154 27.77 c.46.1.1 65975 3cs3A 277 28.28 1jmsA 381 28.64 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1qtrA 317 29.07 c.69.1.7 34660 1ox8A 107 29.20 b.136.1.1 93671 2phjA 251 30.13 1eysC 382 31.69 a.138.1.2 19678 1v2dA 381 31.77 c.67.1.1 108281 2hazA 105 32.33 b.1.2.1 136303 2hd9A 145 33.86 3bfvA 271 34.59 2pg0A 385 34.70 1sfjA 238 39.19 c.1.10.1 112075 2c2uA 207 40.83 1fnf 368 45.15 1z4eA 153 45.75 d.108.1.1 124431 1iz7A 295 46.12 c.69.1.8 76982 2r6hA 290 46.71 1azwA 313 48.17 c.69.1.7 34658 1gutA 68 49.07 b.40.6.1 65576 1t6sA 162 49.37 a.4.5.60,a.4.5.60 112271,112272 1lmlA 478 50.34 d.92.1.3 40295 1broA 277 53.75 c.69.1.12 34700 1ehyA 294 55.61 c.69.1.11 34693 1vr3A 191 55.61 b.82.1.6 120431 2daqA 110 57.95 b.34.9.2 131354 1xl4A 301 58.66 b.1.18.16,f.14.1.1 115430,115431 1w77A 228 60.24 c.68.1.13 120679 6ldhA 329 61.70 c.2.1.5,d.162.1.1 30161,42128 2i0kA 561 62.57 2ek5A 129 63.14 1csbB 205 64.07 2pfkA 320 64.33 c.89.1.1 35577 1zr6A 503 65.09 1s3zA 165 66.68 d.108.1.1 105250 1zuaX 317 67.20 1kcwA 1046 67.41 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1x4rA 99 67.95 1cs8A 316 69.71 d.3.1.1 37065 2fziA 206 69.74 c.71.1.1 134448 2h6oA 470 70.63 1qsoA 149 71.18 d.108.1.1 40812 2imgA 151 72.16 1o9rA 162 72.24 a.25.1.1 86706 2vm6A 150 72.70 1izcA 339 72.94 c.1.12.5 83838 1dgwA 178 72.98 b.82.1.2 28090 2pw4A 188 73.35 1ux6A 350 73.45 b.29.1.16,g.75.1.1 100145,100146 1ceqA 316 74.17 c.2.1.5,d.162.1.1 30163,42130 2fiaA 162 74.23 d.108.1.1 133514 3b85A 208 75.43 1qm9A 198 77.46 d.58.7.1,d.58.7.1 39207,39208 1cqwA 295 77.59 c.69.1.8 34679 2dgdA 223 77.67 2hlvA 160 77.99 1pud 386 78.31 1ldg 316 78.94 1h7cA 108 80.15 a.7.5.1 70914 2uwgA 171 80.21 1rxdA 159 80.44 c.45.1.1 111959 1qcxA 359 81.44 b.80.1.2 28028 2c40A 312 81.50 2vofA 157 81.94 2b0jA 358 83.74 a.100.1.11,c.2.1.6 127639,127640 1ja1A 622 84.27 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2f6uA 234 84.39 c.1.4.1 133061 2vwiA 303 85.31 2rhwA 283 85.39 2ootA 709 87.43 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1crxA 322 88.00 a.60.9.1,d.163.1.1 18097,42157 1vrbA 342 88.13 b.82.2.11 120450 2dvkA 188 88.50 2pthA 193 88.53 c.56.3.1 33793 2a6cA 83 88.81 a.35.1.13 126236 2dxnA 274 89.18