# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.62e-10 a.60.1.2 100280 2f3nA 76 7.51e-10 a.60.1.2 132885 1b4fA 82 6.24e-09 a.60.1.2 17934 1b0xA 94 8.51e-09 a.60.1.2 17933 1ow5A 85 3.58e-08 a.60.1.2 93630 2e8oA 103 1.90e-06 3bs5B 80 3.52e-05 1oxjA 173 0.002395 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.003271 a.60.1.2 73077 3bs5A 106 0.04026 2d3dA 88 0.05188 1dxsA 80 0.05929 a.60.1.2 17944 3bs7A 78 0.06586 1cokA 68 0.09148 a.60.1.2 17945 1pk1B 89 0.1395 a.60.1.2 118712 1aq6A 253 1.732 c.108.1.1 43331 2fjcA 156 2.109 a.25.1.1 133559 2qg3A 208 2.228 1t2dA 322 3.216 c.2.1.5,d.162.1.1 99084,99085 1ji4A 144 3.584 a.25.1.1 77117 2fdrA 229 4.239 c.108.1.6 133319 3mdeA 385 4.491 a.29.3.1,e.6.1.1 16594,42855 2rflA 173 4.533 2ekgA 327 5.135 1uqvA 85 6.785 a.60.1.2 99798 2vigA 391 6.904 2zf5O 497 6.950 2c41A 158 7.043 2cprA 124 7.502 a.60.8.4 130705 1oxnA 140 7.512 g.52.1.1 93704 2v7pA 310 7.700 2d5kA 156 7.755 2f48A 555 7.778 c.89.1.1 132915 1q06A 135 8.259 a.6.1.3 95493 1iu8A 206 8.719 c.56.4.1 71436 3b5nC 70 8.931 1y7tA 327 9.150 c.2.1.5,d.162.1.1 122718,122719 2z90A 161 9.184 1a2zA 220 9.197 c.56.4.1 33794 1jqiA 388 9.719 a.29.3.1,e.6.1.1 67087,67088 1iirA 415 9.854 c.87.1.5 62453 2jbrA 422 9.97 2dkyA 91 10.33 1kmiZ 214 11.47 h.4.11.1 72752 2jgoA 31 12.41 1y9bA 90 13.61 a.43.1.9 122777 1amoA 615 14.98 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1r7mA 235 16.21 d.95.2.1,d.95.2.1 111713,111714 2d29A 387 17.41 a.29.3.1,e.6.1.1 131157,131158 1o6aA 96 18.45 b.139.1.1 92562 1lmlA 478 18.98 d.92.1.3 40295 3mddA 385 19.28 a.29.3.1,e.6.1.1 16592,42853 1ceqA 316 20.36 c.2.1.5,d.162.1.1 30163,42130 1ez3A 127 21.47 a.47.2.1 17768 3cs3A 277 21.56 1eysC 382 22.22 a.138.1.2 19678 6ldhA 329 22.24 c.2.1.5,d.162.1.1 30161,42128 1cosA 31 22.44 k.4.1.1 46405 2yysA 286 22.85 1zkdA 387 25.21 c.66.1.52 125184 1ldg 316 26.66 1qtrA 317 26.71 c.69.1.7 34660 1sflA 238 27.25 c.1.10.1 112077 1wm1A 317 28.49 c.69.1.7 109405 2z1qA 577 28.81 2c2uA 207 30.08 2pytA 133 30.97 2dvkA 188 31.19 1ur5A 309 34.47 c.2.1.5,d.162.1.1 99807,99808 1jmsA 381 35.15 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1v2dA 381 35.95 c.67.1.1 108281 1u9lA 70 36.77 a.60.4.2 107751 1vrbA 342 36.88 b.82.2.11 120450 1uxjA 309 37.53 c.2.1.5,d.162.1.1 108112,108113 1ehyA 294 38.75 c.69.1.11 34693 2i6tA 303 38.99 1lvlA 458 40.61 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2ek5A 129 40.74 3d2lA 243 41.63 2c2jA 211 42.76 1broA 277 43.30 c.69.1.12 34700 2bhwA 232 43.73 1hyhA 309 44.24 c.2.1.5,d.162.1.1 30150,42117 1iz7A 295 44.43 c.69.1.8 76982 1ou8A 111 44.81 b.136.1.1 93543 2pw4A 188 44.87 2pg0A 385 45.29 1pzgA 331 46.47 c.2.1.5,d.162.1.1 95425,95426 2d4wA 504 46.93 1azwA 313 47.41 c.69.1.7 34658 2fziA 206 47.49 c.71.1.1 134448 1o9rA 162 48.51 a.25.1.1 86706 2hazA 105 50.01 b.1.2.1 136303 1t6sA 162 50.67 a.4.5.60,a.4.5.60 112271,112272 2i1qA 322 50.86 a.60.4.1,c.37.1.11 136984,136985 1uouA 474 51.32 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1kcwA 1046 52.86 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2vphA 100 53.28 1xdyA 298 53.78 d.176.1.1 115186 2c40A 312 54.24 1t4oA 117 54.38 d.50.1.1 106425 2h5gA 463 55.29 1xl4A 301 57.08 b.1.18.16,f.14.1.1 115430,115431 1ox8A 107 57.53 b.136.1.1 93671 2co7B 221 60.01 1ux6A 350 62.13 b.29.1.16,g.75.1.1 100145,100146 1ve9A 347 62.58 c.4.1.2,d.16.1.3 100571,100572 1j0fA 100 63.63 c.47.1.14 90739 2hd9A 145 63.72 1a8qA 274 64.78 c.69.1.12 34702 2daqA 110 64.82 b.34.9.2 131354 1tlqA 189 67.58 a.195.1.1 107134 1brt 277 69.35 1sfjA 238 70.67 c.1.10.1 112075 1exzA 141 71.29 a.26.1.2 16877 1omp 370 71.46 2r6hA 290 71.76 1dwkA 156 72.86 a.35.1.4,d.72.1.1 17075,39606 1swvA 267 74.71 c.108.1.3 112134 2hlvA 160 75.13 1jeyB 565 76.75 b.131.1.2,c.62.1.4 90372,90373 1izcA 339 77.29 c.1.12.5 83838 1z4eA 153 77.84 d.108.1.1 124431 2rhwA 283 78.08 1o8vA 134 78.58 b.60.1.2 86680 2fclA 169 79.89 d.218.1.11 133273 2phjA 251 80.31 2z67A 456 80.70 2i0kA 561 81.28 1zr6A 503 81.59 2vgxA 148 82.11 1umnA 165 82.35 a.25.1.1 99607 1bdmA 327 82.37 c.2.1.5,d.162.1.1 30137,42104 2dxnA 274 82.46 1rovA 857 82.95 a.119.1.1,b.12.1.1 97674,97675 1crxA 322 84.48 a.60.9.1,d.163.1.1 18097,42157 2f6uA 234 84.60 c.1.4.1 133061 1xg2B 153 85.43 2z2iA 191 86.14 1hzmA 154 86.16 c.46.1.1 65975 1an9A 340 87.20 c.4.1.2,d.16.1.3 30617,37904 2a6cA 83 87.77 a.35.1.13 126236 1cqwA 295 88.68 c.69.1.8 34679 3bfvA 271 89.51