# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 8.55e-10 a.60.1.2 100280 2f3nA 76 2.43e-08 a.60.1.2 132885 1b4fA 82 2.75e-08 a.60.1.2 17934 1b0xA 94 5.74e-08 a.60.1.2 17933 1ow5A 85 4.25e-07 a.60.1.2 93630 2e8oA 103 2.14e-06 3bs5B 80 4.83e-05 1oxjA 173 0.007119 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.007619 a.60.1.2 73077 3bs5A 106 0.009470 2d3dA 88 0.02590 3bs7A 78 0.07671 1cokA 68 0.1568 a.60.1.2 17945 1dxsA 80 0.3504 a.60.1.2 17944 2qg3A 208 0.3630 1pk1B 89 0.6096 a.60.1.2 118712 2dvkA 188 3.043 2f48A 555 3.921 c.89.1.1 132915 1aq6A 253 4.172 c.108.1.1 43331 1zxxA 319 5.781 1u9lA 70 6.136 a.60.4.2 107751 1tiwA 602 6.461 a.176.1.1,c.1.23.2 112430,112431 2f4qA 346 8.339 2pfkA 320 8.779 c.89.1.1 35577 1iu8A 206 9.152 c.56.4.1 71436 1kmiZ 214 9.921 h.4.11.1 72752 1dwkA 156 10.46 a.35.1.4,d.72.1.1 17075,39606 2c41A 158 10.61 2ekgA 327 11.58 1y7yA 74 12.79 a.35.1.3 122729 2fjcA 156 13.32 a.25.1.1 133559 1jeqB 565 14.06 b.131.1.2,c.62.1.4 90368,90369 2d5kA 156 14.55 2cprA 124 15.62 a.60.8.4 130705 2hlvA 160 16.45 2r25A 167 17.71 1fntc 245 18.94 1jipA 403 19.54 a.104.1.1 66748 3cz6A 168 20.58 1vl2A 421 20.62 c.26.2.1,d.210.1.1 108708,108709 2z2iA 191 22.12 1uqvA 85 22.81 a.60.1.2 99798 1jmsA 381 22.84 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1jeyB 565 23.08 b.131.1.2,c.62.1.4 90372,90373 1oxnA 140 24.43 g.52.1.1 93704 1rztA 331 24.53 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1ki9A 192 25.39 c.37.1.1 84404 1mc3A 296 25.50 c.68.1.6 78943 1jeyA 609 25.65 b.131.1.1,c.62.1.3 90370,90371 2vphA 100 26.10 2b5aA 77 26.35 a.35.1.3 127882 2abyA 146 27.21 1zkdA 387 27.80 c.66.1.52 125184 1qaxA 428 27.99 d.58.20.1,d.179.1.1 39376,42597 1b1cA 181 28.01 c.23.5.2 31212 1umdA 367 28.56 c.36.1.11 99599 1geqA 248 29.34 c.1.2.4 28589 2jbrA 422 29.69 1e7wA 291 30.22 c.2.1.2 59373 1tljA 213 30.59 d.282.1.1 107126 2phjA 251 30.87 1e1hA 287 31.36 d.92.1.7 83167 2pthA 193 31.92 c.56.3.1 33793 1mzjA 339 32.40 c.95.1.2,c.95.1.2 79700,79701 1j0fA 100 33.46 c.47.1.14 90739 1v2dA 381 34.29 c.67.1.1 108281 1thtA 305 34.69 c.69.1.13 34711 1qtrA 317 34.92 c.69.1.7 34660 1jqiA 388 36.61 a.29.3.1,e.6.1.1 67087,67088 1h7cA 108 37.16 a.7.5.1 70914 1wm1A 317 37.62 c.69.1.7 109405 1htwA 158 37.87 c.37.1.18 71083 3mdeA 385 41.05 a.29.3.1,e.6.1.1 16594,42855 1lvwA 295 43.02 c.68.1.6 84723 1uouA 474 43.25 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2vigA 391 43.98 2daqA 110 44.00 b.34.9.2 131354 2h2kA 106 44.88 1od5A 492 46.66 b.82.1.2,b.82.1.2 86832,86833 3pfk 319 47.91 1azwA 313 48.26 c.69.1.7 34658 2yysA 286 48.64 1un8A 552 49.83 c.119.1.2,a.208.1.1 103806,99661 1ly1A 181 50.57 c.37.1.1 74334 1h4lD 147 52.22 a.74.1.1 70873 2a6cA 83 52.91 a.35.1.13 126236 2z90A 161 52.97 1xeaA 323 53.34 c.2.1.3,d.81.1.5 109572,109573 1u4qA 322 55.18 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1fxoA 293 55.73 c.68.1.6 34524 1y7tA 327 56.22 c.2.1.5,d.162.1.1 122718,122719 1f0kA 364 56.39 c.87.1.2 35465 2ehwA 120 58.13 1vdlA 80 58.67 a.5.2.1 108528 3bqsA 93 59.34 3bl4A 124 59.69 6pfkA 319 61.32 c.89.1.1 35583 2dxnA 274 62.33 1jeqA 609 62.87 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1amoA 615 63.15 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2fiaA 162 66.19 d.108.1.1 133514 1ji4A 144 66.55 a.25.1.1 77117 1z8oA 404 68.29 a.104.1.1 124722 1dipA 78 68.71 h.1.12.1 45632 1ewjA 126 69.36 d.32.1.2 59526 2d29A 387 72.04 a.29.3.1,e.6.1.1 131157,131158 2a25A 193 72.12 1gd5A 130 73.15 d.189.1.1 60439 1h6hA 143 73.27 d.189.1.1 65681 2dkyA 91 74.86 1a2zA 220 74.93 c.56.4.1 33794 2cx6A 90 75.86 c.9.1.1 130981 2a0b 125 77.27 2pytA 133 77.64 2fug7 129 80.68 1wy1A 172 84.18 2qalM 117 84.68 1pud 386 85.18 2onuA 152 86.97 2h5gA 463 88.20 1r2jA 366 88.40 a.29.3.1,e.6.1.1 96869,96870