# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.04e-09 a.60.1.2 100280 2f3nA 76 6.09e-09 a.60.1.2 132885 1b4fA 82 3.52e-08 a.60.1.2 17934 1b0xA 94 4.26e-08 a.60.1.2 17933 1ow5A 85 1.57e-07 a.60.1.2 93630 2e8oA 103 6.38e-06 3bs5B 80 0.000117 1oxjA 173 0.01022 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.01765 a.60.1.2 73077 3bs7A 78 0.07010 2d3dA 88 0.07872 3bs5A 106 0.08523 1dxsA 80 0.1195 a.60.1.2 17944 1cokA 68 0.1569 a.60.1.2 17945 1pk1B 89 0.5260 a.60.1.2 118712 2fjcA 156 1.896 a.25.1.1 133559 1kmiZ 214 2.193 h.4.11.1 72752 1ji4A 144 3.646 a.25.1.1 77117 2f48A 555 3.798 c.89.1.1 132915 2c41A 158 3.855 2z90A 161 4.163 2ekgA 327 4.228 2d5kA 156 4.500 2rflA 173 5.303 2jgoA 31 5.914 2zf5O 497 6.975 3b5nC 70 6.998 2qg3A 208 7.026 1q06A 135 7.575 a.6.1.3 95493 2dkyA 91 7.714 2cprA 124 7.913 a.60.8.4 130705 1j0fA 100 8.438 c.47.1.14 90739 2fdrA 229 8.850 c.108.1.6 133319 1o6aA 96 9.216 b.139.1.1 92562 1hzmA 154 9.328 c.46.1.1 65975 2yysA 286 10.02 2phjA 251 10.08 3mdeA 385 10.94 a.29.3.1,e.6.1.1 16594,42855 2h5gA 463 11.36 1rovA 857 11.37 a.119.1.1,b.12.1.1 97674,97675 1cosA 31 11.44 k.4.1.1 46405 1wm1A 317 11.61 c.69.1.7 109405 1y7tA 327 11.93 c.2.1.5,d.162.1.1 122718,122719 1qtrA 317 13.94 c.69.1.7 34660 1y9bA 90 14.93 a.43.1.9 122777 1t2dA 322 16.08 c.2.1.5,d.162.1.1 99084,99085 2csgA 424 16.83 b.82.2.12 130768 1xdyA 298 17.58 d.176.1.1 115186 2pw4A 188 18.12 1zxxA 319 19.47 1vr3A 191 20.26 b.82.1.6 120431 1iirA 415 20.31 c.87.1.5 62453 2pytA 133 20.66 1iz7A 295 20.97 c.69.1.8 76982 1ou8A 111 21.08 b.136.1.1 93543 2gr8A 99 22.05 d.24.1.4 135522 1aq6A 253 23.62 c.108.1.1 43331 1azwA 313 24.10 c.69.1.7 34658 2c2uA 207 24.41 2vigA 391 26.77 2hujA 140 26.97 a.24.26.1 136777 1sflA 238 27.53 c.1.10.1 112077 2hazA 105 29.03 b.1.2.1 136303 1gutA 68 30.98 b.40.6.1 65576 1ox8A 107 31.46 b.136.1.1 93671 1jqiA 388 31.72 a.29.3.1,e.6.1.1 67087,67088 1ehyA 294 31.80 c.69.1.11 34693 2jbrA 422 33.07 3cs3A 277 33.12 1uqvA 85 33.38 a.60.1.2 99798 2c2jA 211 33.66 6ldhA 329 35.94 c.2.1.5,d.162.1.1 30161,42128 1o9rA 162 36.54 a.25.1.1 86706 3cz6A 168 37.11 2v7pA 310 38.19 3b85A 208 38.70 2r6hA 290 39.82 3mddA 385 39.84 a.29.3.1,e.6.1.1 16592,42853 1r7mA 235 40.85 d.95.2.1,d.95.2.1 111713,111714 1k2xA 177 41.10 d.153.1.5 90929 1dgwA 178 41.34 b.82.1.2 28090 1knxA 312 42.53 c.98.2.1,c.91.1.2 77459,77460 2pfkA 320 43.04 c.89.1.1 35577 2rhwA 283 43.32 2fug7 129 43.33 2ek5A 129 43.45 2f4qA 346 43.47 2dvkA 188 43.56 1mtzA 293 44.39 c.69.1.7 79467 3bfvA 271 47.81 2i33A 258 48.15 1amoA 615 48.96 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1zuaX 317 49.91 1ez3A 127 50.03 a.47.2.1 17768 1h7cA 108 50.52 a.7.5.1 70914 1qsoA 149 50.56 d.108.1.1 40812 2d29A 387 52.80 a.29.3.1,e.6.1.1 131157,131158 1h9sA 140 52.97 b.40.6.2,b.40.6.2 60843,60844 1fnf 368 52.98 1t6sA 162 54.60 a.4.5.60,a.4.5.60 112271,112272 2d4wA 504 55.33 3bjuA 521 57.57 2vgxA 148 58.17 1izcA 339 58.99 c.1.12.5 83838 2pujA 286 60.01 1cv2A 296 60.19 c.69.1.8 34680 2hlvA 160 60.39 1pud 386 60.80 2vm6A 150 61.78 1vj7A 393 63.87 a.211.1.1,d.218.1.8 100801,100802 1mj5A 302 63.93 c.69.1.8 91285 1qcxA 359 64.55 b.80.1.2 28028 1exzA 141 64.94 a.26.1.2 16877 1of8A 370 66.45 c.1.10.4 92819 2fp7A 54 66.70 2fziA 206 66.87 c.71.1.1 134448 1fxkB 109 66.96 a.2.5.1 15704 1z4eA 153 67.50 d.108.1.1 124431 1v2dA 381 67.53 c.67.1.1 108281 2z1qA 577 68.00 1csbB 205 68.43 1bn6A 294 70.71 c.69.1.8 34678 2oltA 227 71.67 1ojqA 212 72.76 d.166.1.1 93146 1htwA 158 72.79 c.37.1.18 71083 1uouA 474 73.10 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1h9mA 145 73.13 b.40.6.2,b.40.6.2 60833,60834 2hd9A 145 73.28 1uxjA 309 74.39 c.2.1.5,d.162.1.1 108112,108113 1rxdA 159 75.35 c.45.1.1 111959 2pg0A 385 75.41 2imgA 151 76.33 3b4dA 96 76.53 2cklA 108 76.81 2z2iA 191 78.23 1swvA 267 78.37 c.108.1.3 112134 1umnA 165 79.05 a.25.1.1 99607 1ads 315 81.16 1zvkA 358 81.76 1oxnA 140 82.21 g.52.1.1 93704 1so7A 382 83.05 b.68.1.1 112106 2puhA 286 84.54 1broA 277 84.74 c.69.1.12 34700 4dpvZ 584 84.98 b.121.5.2 23377 2hdoA 209 85.84 c.108.1.6 136345 1b22A 114 86.76 a.60.4.1 17969 1va4A 279 86.79 c.69.1.12 108458 2dgdA 223 87.53 1jigA 146 87.64 a.25.1.1 71685 1crxA 322 88.08 a.60.9.1,d.163.1.1 18097,42157 2q16A 219 89.91