# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 5.30e-06 a.60.1.2 100280 2f3nA 76 1.20e-05 a.60.1.2 132885 1b4fA 82 4.55e-05 a.60.1.2 17934 1b0xA 94 5.17e-05 a.60.1.2 17933 1ow5A 85 0.000116 a.60.1.2 93630 2e8oA 103 0.001787 3bs5B 80 0.01725 1kw4A 89 0.5099 a.60.1.2 73077 1zd3A 555 1.355 c.108.1.2,c.69.1.11 124930,124931 2d3dA 88 1.408 1kmiZ 214 2.142 h.4.11.1 72752 1dxsA 80 2.759 a.60.1.2 17944 3bs7A 78 3.141 3bs5A 106 3.170 1cokA 68 3.657 a.60.1.2 17945 1ooyA 481 3.906 c.124.1.3,c.124.1.2 93388,93389 1htyA 1015 3.912 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2sli 679 4.288 1qba 858 5.073 1oxjA 173 5.495 a.60.1.2,a.118.1.13 87517,87518 1v0eA 666 5.592 b.68.1.2,b.108.1.3 113466,113467 1pk1B 89 6.888 a.60.1.2 118712 1zxxA 319 7.015 2nwlA 422 8.425 2p3rA 510 8.913 c.55.1.4,c.55.1.4 139471,139472 1j7nA 776 12.35 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1ja1A 622 12.48 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2qf2A 624 12.71 1qo8A 566 13.34 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1jvnA 555 13.37 c.1.2.1,c.23.16.1 67355,67356 1clcA 639 15.99 a.102.1.2,b.1.18.2 18835,21872 1ar1A 558 16.38 f.24.1.1 43618 1kit 757 17.39 2fjcA 156 17.85 a.25.1.1 133559 1fnf 368 19.35 2hj0A 519 19.64 2z90A 161 20.99 1xfiA 367 21.16 e.50.1.1 109584 2r6fA 972 22.07 1i21A 159 22.22 d.108.1.1 61549 1rypL 212 22.29 d.153.1.4 41880 2fdrA 229 23.27 c.108.1.6 133319 2btvA 901 23.74 e.28.1.1 43376 2i33A 258 24.21 2phjA 251 24.69 1f0xA 571 24.78 d.58.32.2,d.145.1.1 39483,41746 1rovA 857 25.25 a.119.1.1,b.12.1.1 97674,97675 1jmsA 381 25.27 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2zf5O 497 25.28 1xl4A 301 27.15 b.1.18.16,f.14.1.1 115430,115431 1ji4A 144 28.62 a.25.1.1 77117 1y7tA 327 28.87 c.2.1.5,d.162.1.1 122718,122719 1amoA 615 29.02 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2d5kA 156 30.21 1g8jA 825 30.23 b.52.2.2,c.81.1.1 26924,35332 2r8jA 554 30.72 2z1qA 577 30.75 1qi9A 556 31.68 a.111.1.2 19053 1ou8A 111 35.33 b.136.1.1 93543 1qcxA 359 36.65 b.80.1.2 28028 1dpeA 507 36.77 c.94.1.1 35799 2o02A 230 38.12 1wcqA 601 39.66 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1cc1L 498 39.77 e.18.1.1 43301 1jqiA 388 41.40 a.29.3.1,e.6.1.1 67087,67088 2z8xA 617 41.42 1cr6B 554 42.32 c.69.1.11,c.108.1.2 34688,43338 2gdnA 267 42.63 2ekgA 327 42.83 1h7wA 1025 43.85 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2uy1A 493 44.14 1c8zA 265 44.48 d.23.1.1 38375 1w2yA 229 44.92 a.204.1.1 109140 2bklA 695 45.24 1lm4A 194 45.36 d.167.1.1 84626 1o6aA 96 45.84 b.139.1.1 92562 2f48A 555 45.89 c.89.1.1 132915 1fgqA 839 46.28 a.119.1.1,b.12.1.1 59826,59827 2cprA 124 46.63 a.60.8.4 130705 2vhxA 377 47.37 1xdyA 298 48.48 d.176.1.1 115186 2jgoA 31 48.56 2dkyA 91 49.78 2rhsB 800 49.89 1ox8A 107 50.22 b.136.1.1 93671 1jqpA 438 51.56 b.61.5.1,d.3.1.1 77162,77163 2rflA 173 52.96 1rlmA 271 55.83 c.108.1.10 111860 3pfk 319 55.92 1t1iA 364 57.62 c.41.1.2 106248 1q1rA 431 57.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3mdeA 385 58.08 a.29.3.1,e.6.1.1 16594,42855 1jx4A 352 58.40 d.240.1.1,e.8.1.7 90378,90379 1aq6A 253 58.85 c.108.1.1 43331 2gu1A 361 59.67 1xf1A 926 59.97 1zdnA 158 61.07 d.20.1.1 124943 2p3yA 491 62.25 2qxfA 482 62.69 1vaoA 560 62.73 d.58.32.1,d.145.1.1 39461,41724 1oxnA 140 65.17 g.52.1.1 93704 3ceyA 474 65.71 1hfuA 503 65.78 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2vgnA 386 66.71 3b5nC 70 66.96 1qniA 581 66.97 b.6.1.4,b.69.3.1 23042,27642 1hkbA 917 67.07 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1v7wA 807 67.29 a.102.1.4,b.30.5.3 108411,108412 2uwgA 171 67.85 1xwtA 405 68.57 a.102.1.2 122410 2yysA 286 71.02 1hm9A 468 71.09 b.81.1.4,c.68.1.5 65866,65867 2shpA 525 72.10 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1klqA 197 73.97 d.135.1.1 68689 104lA 166 75.11 d.2.1.3 36969 1wm1A 317 77.45 c.69.1.7 109405 1jigA 146 78.71 a.25.1.1 71685 1i7dA 659 79.52 e.10.1.1 61886 1sqjA 789 80.23 b.69.13.1,b.69.13.1 105918,105919 2dxnA 274 80.94 1mxgA 435 81.61 b.71.1.1,c.1.8.1 85193,85194 2i2cA 272 81.62 1mwsA 646 82.58 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 2jayA 291 82.87 1cosA 31 83.10 k.4.1.1 46405 1eovA 487 86.33 b.40.4.1,d.104.1.1 25239,40760 1ri6A 343 86.91 b.69.11.1 97503 1gpeA 587 88.01 c.3.1.2,d.16.1.1 30387,37951 1ksiA 642 89.38 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2qeeA 437 89.69