# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.14e-09 a.60.1.2 100280 2f3nA 76 5.11e-09 a.60.1.2 132885 1b4fA 82 3.15e-08 a.60.1.2 17934 1b0xA 94 4.74e-08 a.60.1.2 17933 1ow5A 85 8.27e-08 a.60.1.2 93630 2e8oA 103 4.03e-06 3bs5B 80 4.86e-05 1oxjA 173 0.004482 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.004771 a.60.1.2 73077 2d3dA 88 0.03295 3bs7A 78 0.04561 3bs5A 106 0.04944 1dxsA 80 0.1107 a.60.1.2 17944 1pk1B 89 0.1133 a.60.1.2 118712 1cokA 68 0.1335 a.60.1.2 17945 1kmiZ 214 2.449 h.4.11.1 72752 1q06A 135 2.792 a.6.1.3 95493 2fdrA 229 3.080 c.108.1.6 133319 1aq6A 253 3.176 c.108.1.1 43331 2fjcA 156 3.610 a.25.1.1 133559 2ekgA 327 4.747 2d5kA 156 6.054 2z90A 161 6.093 1ji4A 144 6.199 a.25.1.1 77117 1uqvA 85 6.261 a.60.1.2 99798 2c41A 158 6.559 2dkyA 91 6.746 2cprA 124 6.862 a.60.8.4 130705 1o6aA 96 7.161 b.139.1.1 92562 2jgoA 31 7.920 2f48A 555 9.99 c.89.1.1 132915 1t2dA 322 10.33 c.2.1.5,d.162.1.1 99084,99085 2qg3A 208 11.40 2zf5O 497 11.52 2yysA 286 12.95 3mdeA 385 14.00 a.29.3.1,e.6.1.1 16594,42855 1y7tA 327 14.76 c.2.1.5,d.162.1.1 122718,122719 1wm1A 317 15.90 c.69.1.7 109405 1qtrA 317 16.06 c.69.1.7 34660 2rflA 173 16.84 1cosA 31 17.25 k.4.1.1 46405 1ou8A 111 17.43 b.136.1.1 93543 1y9bA 90 17.73 a.43.1.9 122777 3b5nC 70 18.54 2hazA 105 18.77 b.1.2.1 136303 2ek5A 129 20.44 6ldhA 329 22.40 c.2.1.5,d.162.1.1 30161,42128 2fziA 206 22.52 c.71.1.1 134448 1iirA 415 22.60 c.87.1.5 62453 1azwA 313 22.95 c.69.1.7 34658 1ox8A 107 23.09 b.136.1.1 93671 1iz7A 295 23.31 c.69.1.8 76982 2pw4A 188 23.34 1k2xA 177 25.00 d.153.1.5 90929 1ehyA 294 25.29 c.69.1.11 34693 1fnf 368 25.53 2v7pA 310 25.67 1ojqA 212 26.65 d.166.1.1 93146 1swvA 267 26.81 c.108.1.3 112134 2go7A 207 26.93 c.108.1.6 135434 2vigA 391 28.07 2hdoA 209 28.85 c.108.1.6 136345 1jmsA 381 33.62 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1r7mA 235 34.05 d.95.2.1,d.95.2.1 111713,111714 1jqiA 388 34.57 a.29.3.1,e.6.1.1 67087,67088 1izcA 339 35.12 c.1.12.5 83838 1zxxA 319 35.78 1ez3A 127 36.10 a.47.2.1 17768 1uxjA 309 36.12 c.2.1.5,d.162.1.1 108112,108113 2jbrA 422 36.34 1broA 277 37.09 c.69.1.12 34700 2c2uA 207 37.22 2pytA 133 37.78 2hd9A 145 38.46 1vr3A 191 41.83 b.82.1.6 120431 2dvkA 188 42.13 2rhwA 283 42.24 2vm6A 150 42.61 1zkdA 387 42.79 c.66.1.52 125184 1ceqA 316 43.23 c.2.1.5,d.162.1.1 30163,42130 2hzbA 333 43.57 c.143.1.1 136911 1h7cA 108 43.63 a.7.5.1 70914 1o9rA 162 43.64 a.25.1.1 86706 2bhwA 232 44.25 1j0fA 100 44.85 c.47.1.14 90739 2d29A 387 45.98 a.29.3.1,e.6.1.1 131157,131158 1zuaX 317 46.95 3cs3A 277 47.43 1vj7A 393 47.72 a.211.1.1,d.218.1.8 100801,100802 2hujA 140 48.36 a.24.26.1 136777 1knxA 312 48.50 c.98.2.1,c.91.1.2 77459,77460 2c2jA 211 48.54 2d4wA 504 50.04 1oxnA 140 50.91 g.52.1.1 93704 2phjA 251 51.55 3cz6A 168 52.23 1crxA 322 52.40 a.60.9.1,d.163.1.1 18097,42157 1amoA 615 52.48 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1t6sA 162 53.85 a.4.5.60,a.4.5.60 112271,112272 3mddA 385 54.01 a.29.3.1,e.6.1.1 16592,42853 1x42A 232 55.16 c.108.1.1 121677 1cx8B 639 56.74 a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 1mtzA 293 57.21 c.69.1.7 79467 1pud 386 57.75 2csgA 424 58.50 b.82.2.12 130768 2pujA 286 59.55 2okuA 131 60.77 2hlvA 160 62.90 1bn6A 294 65.33 c.69.1.8 34678 1exzA 141 65.37 a.26.1.2 16877 1brt 277 65.68 1v2dA 381 66.26 c.67.1.1 108281 2vgxA 148 67.30 1cv2A 296 67.43 c.69.1.8 34680 2daqA 110 67.73 b.34.9.2 131354 4dpvZ 584 68.04 b.121.5.2 23377 1gutA 68 69.81 b.40.6.1 65576 2vofA 157 69.84 2qsbA 89 72.50 1t4oA 117 74.02 d.50.1.1 106425 1eysC 382 74.58 a.138.1.2 19678 1rxdA 159 74.76 c.45.1.1 111959 2fp7A 54 75.02 2puhA 286 75.09 1w77A 228 76.32 c.68.1.13 120679 1dxeA 256 76.82 c.1.12.5 29310 1ldg 316 77.21 1dwkA 156 79.28 a.35.1.4,d.72.1.1 17075,39606 2j5dA 45 79.66 1rovA 857 79.94 a.119.1.1,b.12.1.1 97674,97675 1ve9A 347 80.72 c.4.1.2,d.16.1.3 100571,100572 1r5yA 386 81.04 c.1.20.1 97134 1fxkB 109 81.26 a.2.5.1 15704 1ashA 150 81.49 a.1.1.2 15622 1hzmA 154 82.40 c.46.1.1 65975 2pibA 216 82.77 1bdmA 327 83.93 c.2.1.5,d.162.1.1 30137,42104 1so7A 382 83.93 b.68.1.1 112106 1uujA 88 85.45 a.221.1.1 108046 1fntc 245 86.38 1uouA 474 88.06 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1csbB 205 88.44 1mj5A 302 89.01 c.69.1.8 91285 1a8qA 274 89.22 c.69.1.12 34702