# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.95e-09 a.60.1.2 100280 2f3nA 76 8.85e-09 a.60.1.2 132885 1b4fA 82 4.00e-08 a.60.1.2 17934 1b0xA 94 7.63e-08 a.60.1.2 17933 1ow5A 85 3.64e-07 a.60.1.2 93630 2e8oA 103 3.02e-06 3bs5B 80 5.73e-05 1oxjA 173 0.008058 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.01457 a.60.1.2 73077 2d3dA 88 0.07257 3bs5A 106 0.07353 3bs7A 78 0.1971 1cokA 68 0.2756 a.60.1.2 17945 1dxsA 80 0.3129 a.60.1.2 17944 1pk1B 89 0.6182 a.60.1.2 118712 2f48A 555 2.560 c.89.1.1 132915 1a2zA 220 3.055 c.56.4.1 33794 1iu8A 206 5.172 c.56.4.1 71436 1kcwA 1046 5.240 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1aq6A 253 5.500 c.108.1.1 43331 1q06A 135 6.071 a.6.1.3 95493 1amoA 615 6.415 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2cprA 124 6.511 a.60.8.4 130705 1kmiZ 214 7.223 h.4.11.1 72752 2zf5O 497 8.238 2dxnA 274 9.328 2fdrA 229 10.75 c.108.1.6 133319 2fjcA 156 12.55 a.25.1.1 133559 1uqvA 85 13.48 a.60.1.2 99798 2rflA 173 14.05 2vigA 391 14.25 1uouA 474 15.34 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 3mdeA 385 15.52 a.29.3.1,e.6.1.1 16594,42855 2qg3A 208 15.80 1augA 215 16.48 c.56.4.1 33798 1oxnA 140 18.12 g.52.1.1 93704 1t2dA 322 19.01 c.2.1.5,d.162.1.1 99084,99085 1xdyA 298 19.24 d.176.1.1 115186 1jqiA 388 19.57 a.29.3.1,e.6.1.1 67087,67088 1rovA 857 21.53 a.119.1.1,b.12.1.1 97674,97675 2ekgA 327 22.64 2dkyA 91 23.30 2dvkA 188 24.70 1y7tA 327 24.95 c.2.1.5,d.162.1.1 122718,122719 1iirA 415 25.22 c.87.1.5 62453 1m3iA 471 26.90 f.9.1.1 91178 1v2dA 381 27.53 c.67.1.1 108281 2jgoA 31 29.52 2d5kA 156 29.58 2z90A 161 31.35 1qo7A 394 31.81 c.69.1.11 34697 1lmlA 478 31.87 d.92.1.3 40295 2d4wA 504 32.96 2sli 679 33.67 1zkdA 387 34.13 c.66.1.52 125184 1ji4A 144 34.49 a.25.1.1 77117 2c41A 158 35.81 2jbrA 422 36.43 2gr8A 99 36.81 d.24.1.4 135522 1y9bA 90 37.10 a.43.1.9 122777 2phjA 251 38.75 1zxxA 319 38.94 2h5gA 463 39.69 1o6aA 96 40.42 b.139.1.1 92562 2hazA 105 41.08 b.1.2.1 136303 2pytA 133 41.49 1r7mA 235 42.10 d.95.2.1,d.95.2.1 111713,111714 2d29A 387 42.30 a.29.3.1,e.6.1.1 131157,131158 2v7pA 310 44.43 3b5nC 70 44.63 2hd9A 145 45.02 1j0fA 100 47.53 c.47.1.14 90739 1tiwA 602 47.67 a.176.1.1,c.1.23.2 112430,112431 1qaxA 428 48.07 d.58.20.1,d.179.1.1 39376,42597 1ou8A 111 48.62 b.136.1.1 93543 1jmsA 381 48.73 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1t4oA 117 51.85 d.50.1.1 106425 1cx8B 639 54.39 a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 1cosA 31 54.84 k.4.1.1 46405 1lvlA 458 55.18 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1pfo 500 55.28 2jf2A 264 55.44 b.81.1.1 138289 2aq9A 262 60.18 b.81.1.1 127167 1hzmA 154 60.95 c.46.1.1 65975 2z1qA 577 62.83 3mddA 385 65.63 a.29.3.1,e.6.1.1 16592,42853 2pfkA 320 65.93 c.89.1.1 35577 2yysA 286 68.15 1ox8A 107 71.89 b.136.1.1 93671 2pw4A 188 73.17 6ldhA 329 73.74 c.2.1.5,d.162.1.1 30161,42128 3cs3A 277 73.91 1dwkA 156 75.57 a.35.1.4,d.72.1.1 17075,39606 2vofA 157 76.60 2co7B 221 79.60 1xl4A 301 79.88 b.1.18.16,f.14.1.1 115430,115431 1w77A 228 80.08 c.68.1.13 120679 1ux6A 350 80.49 b.29.1.16,g.75.1.1 100145,100146 2f6uA 234 80.76 c.1.4.1 133061 1s3zA 165 81.80 d.108.1.1 105250 1r59O 505 86.46 c.55.1.4,c.55.1.4 111697,111698 1qtrA 317 88.43 c.69.1.7 34660 3b9jB 350 88.71 1yewA 382 89.07